Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FVA71_RS10545 Genome accession   NZ_CP042878
Coordinates   2221108..2221764 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain NMBU_W05E18     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2216108..2226764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA71_RS10515 (FVA71_10830) dcyD 2216988..2217974 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  FVA71_RS10520 (FVA71_10835) tcyL 2217989..2218657 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  FVA71_RS10525 (FVA71_10840) tcyN 2218654..2219406 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FVA71_RS10530 (FVA71_10845) sdiA 2219636..2220358 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  FVA71_RS10535 (FVA71_10850) yecF 2220425..2220649 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  FVA71_RS10540 (FVA71_10855) yecU 2220636..2220812 (-) 177 WP_000590347.1 protein YecU -
  FVA71_RS10545 (FVA71_10860) letA 2221108..2221764 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FVA71_RS10550 (FVA71_10865) uvrC 2221761..2223593 (+) 1833 WP_001551272.1 excinuclease ABC subunit UvrC Machinery gene
  FVA71_RS10555 (FVA71_10870) pgsA 2223650..2224198 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FVA71_RS10575 (FVA71_10890) yecA 2224848..2225513 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=332486 FVA71_RS10545 WP_000611328.1 2221108..2221764(+) (letA) [Escherichia coli strain NMBU_W05E18]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=332486 FVA71_RS10545 WP_000611328.1 2221108..2221764(+) (letA) [Escherichia coli strain NMBU_W05E18]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGAGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482