Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EKQ63_RS09425 Genome accession   NZ_CP034686
Coordinates   1440041..1440643 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus sp. BD59S     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435041..1445643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS09405 (EKQ63_09385) dnaD 1435357..1436064 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  EKQ63_RS09410 (EKQ63_09390) nth 1436080..1436727 (+) 648 WP_087994413.1 endonuclease III -
  EKQ63_RS09415 (EKQ63_09395) - 1436731..1437249 (+) 519 WP_087951874.1 YpoC family protein -
  EKQ63_RS09420 (EKQ63_09400) - 1437273..1439975 (-) 2703 WP_087994412.1 PBP1A family penicillin-binding protein -
  EKQ63_RS09425 (EKQ63_09405) recU 1440041..1440643 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  EKQ63_RS09430 (EKQ63_09410) - 1440747..1441772 (+) 1026 WP_143880980.1 DUF2515 domain-containing protein -
  EKQ63_RS30165 - 1441926..1442111 (-) 186 WP_087994411.1 phage portal protein -
  EKQ63_RS09435 (EKQ63_09415) - 1442197..1442439 (+) 243 WP_001252039.1 hypothetical protein -
  EKQ63_RS09440 (EKQ63_09420) - 1442455..1442799 (+) 345 WP_000872959.1 YppE family protein -
  EKQ63_RS09445 (EKQ63_09425) - 1442824..1443015 (-) 192 WP_000242661.1 YppF family protein -
  EKQ63_RS09450 (EKQ63_09430) - 1443193..1443687 (+) 495 WP_048551627.1 YppG family protein -
  EKQ63_RS09455 (EKQ63_09435) - 1443843..1444244 (+) 402 WP_087951877.1 spore coat protein -
  EKQ63_RS09460 (EKQ63_09440) - 1444301..1444855 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  EKQ63_RS09465 (EKQ63_09445) gpsB 1444953..1445291 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=332487 EKQ63_RS09425 WP_000155593.1 1440041..1440643(-) (recU) [Bacillus sp. BD59S]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=332487 EKQ63_RS09425 WP_000155593.1 1440041..1440643(-) (recU) [Bacillus sp. BD59S]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment