Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HICON_RS00870 Genome accession   NC_014922
Coordinates   191171..191836 (+) Length   221 a.a.
NCBI ID   WP_013527272.1    Uniprot ID   A0ABY1VR37
Organism   Haemophilus influenzae F3047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186171..196836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS00845 (HICON_04420) crp 187710..188384 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  HICON_RS00850 (HICON_04430) - 188369..188620 (-) 252 WP_005647999.1 YheU family protein -
  HICON_RS00855 (HICON_04440) slmA 188642..189298 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  HICON_RS00860 (HICON_04450) dut 189305..189757 (-) 453 WP_006995610.1 dUTP diphosphatase -
  HICON_RS00865 (HICON_04460) coaBC 189805..191007 (-) 1203 WP_006995609.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HICON_RS00870 (HICON_04470) radC 191171..191836 (+) 666 WP_013527272.1 RadC family protein Machinery gene
  HICON_RS00875 (HICON_04480) rpmB 192050..192286 (+) 237 WP_006995608.1 50S ribosomal protein L28 -
  HICON_RS00880 (HICON_04490) rpmG 192298..192468 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  HICON_RS00885 (HICON_04500) - 192815..194179 (+) 1365 WP_006995606.1 diaminobutyrate--2-oxoglutarate transaminase -
  HICON_RS00890 (HICON_04510) vapB2 194326..194559 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  HICON_RS00895 (HICON_04520) vapC 194559..194957 (+) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  HICON_RS00900 (HICON_04530) ddc 194977..196512 (+) 1536 WP_006995605.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24969.23 Da        Isoelectric Point: 6.5991

>NTDB_id=33239 HICON_RS00870 WP_013527272.1 191171..191836(+) (radC) [Haemophilus influenzae F3047]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=33239 HICON_RS00870 WP_013527272.1 191171..191836(+) (radC) [Haemophilus influenzae F3047]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGCTGCCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACTAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

99.095

100

0.991
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment