Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FVE23_RS20505 Genome accession   NZ_CP042843
Coordinates   4194711..4195343 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain JME67     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4189711..4200343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE23_RS20480 yheS 4189880..4191793 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  FVE23_RS20485 yheT 4191793..4192815 (+) 1023 WP_000057356.1 hydrolase -
  FVE23_RS20490 yheU 4192809..4193027 (+) 219 WP_000907085.1 YheU family protein -
  FVE23_RS20495 prkB 4193081..4193950 (+) 870 WP_001274680.1 phosphoribulokinase -
  FVE23_RS20500 yhfA 4194005..4194409 (-) 405 WP_001148908.1 OsmC family protein -
  FVE23_RS20505 crp 4194711..4195343 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FVE23_RS20510 yhfK 4195394..4197484 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  FVE23_RS20515 argD 4197551..4198771 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FVE23_RS20520 pabA 4198857..4199420 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FVE23_RS20525 fic 4199452..4200054 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  FVE23_RS20530 yhfG 4200044..4200211 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=332027 FVE23_RS20505 WP_000242755.1 4194711..4195343(+) (crp) [Escherichia coli strain JME67]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=332027 FVE23_RS20505 WP_000242755.1 4194711..4195343(+) (crp) [Escherichia coli strain JME67]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467