Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EHW89_RS01650 Genome accession   NZ_CP034543
Coordinates   321503..323461 (+) Length   652 a.a.
NCBI ID   WP_126466494.1    Uniprot ID   A0A3Q9F362
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 316503..328461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS01635 (EHW89_01635) ftsL 317414..317734 (+) 321 WP_126466492.1 cell division protein FtsL -
  EHW89_RS01640 (EHW89_01640) pbp2X 317738..319993 (+) 2256 WP_126466493.1 penicillin-binding protein PBP2X -
  EHW89_RS01645 (EHW89_01645) mraY 319995..320978 (+) 984 WP_101749743.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  EHW89_RS01650 (EHW89_01650) amiA3 321503..323461 (+) 1959 WP_126466494.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS01660 (EHW89_01660) - 323931..324812 (+) 882 WP_003025917.1 class II fructose-bisphosphate aldolase -
  EHW89_RS01670 (EHW89_01670) - 325255..325701 (+) 447 WP_126466495.1 LytTR family DNA-binding domain-containing protein -
  EHW89_RS01675 (EHW89_01675) - 325707..326369 (+) 663 WP_126466496.1 LiaF transmembrane domain-containing protein -
  EHW89_RS01680 (EHW89_01680) rpmB 326504..326692 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  EHW89_RS01685 (EHW89_01685) - 326868..327233 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72455.69 Da        Isoelectric Point: 7.3789

>NTDB_id=331762 EHW89_RS01650 WP_126466494.1 321503..323461(+) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLSRAETYWNSKTTNNILFPVNADFLKSQGKNFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLAD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGTENVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNIKNGGSLQNFGLEPGQENDKIKTVGLDTYTEMLAEANAETNEATRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGASSSYFKYVKLQDKIVTTKEYESAKKKWLKEKEISN
KKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=331762 EHW89_RS01650 WP_126466494.1 321503..323461(+) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCGCTGGAATCCTATTATCAGGTTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGACACGCTAAATTATCTGATGGCGAACCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACGTAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCTCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
CTAGATGACTATACAGTACAGTATACACTCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAATTTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTATTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGATAACATTAAATTGACATATTATGACGGCTCTGACCAAGAAGCCCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGCT
TGCAAGATGCGACCAGCTACTATTATAACTTTAACTTAAATCGTCAGTCCTATAACCATACATCGAAGAAAACAGATGCT
CAAAAGACTGCGACCCAAGAAGCGGTGCTAAATAAAGCTTTCCGCCAAGCTATCAACTTTGCCTATAATCGTACTTCTTA
TGGTGCACAAAGTAATGGGAAAGACGGAGCGACAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCG
GTGATAAAACGTTTGGTGATGTTGTGTCTTCTAAGCTGGTAAACTATGGCTCAGAATGGTCAAACATGAATTTGGCTGAT
GCACAAGATGCTTATTACAACCCAGAAAAAGCTAAAGCAAAGTTTGCTCAAGCTAAAGCAGAACTGCAAGCAAAGGGTGT
TCAGTTTCCTATCCACTTAGATGTACCAGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCCATGAAACAAT
CTGTTGAGTCTGTCTTAGGCACAGAAAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTAAATAATATCAGT
TATTTTGCTAATACAGCTGCTCAAAAGGACTATGATTTGTATAATGGTGGTTGGTCTGGTGACTATCAAGACCCATCTAC
TTATCTAGATACTTTGAATATAAAAAATGGTGGTAGTTTACAAAACTTTGGTCTGGAACCAGGTCAAGAAAATGATAAGA
TTAAGACAGTTGGACTGGACACATATACAGAGATGCTAGCAGAAGCAAATGCTGAAACCAATGAAGCTACACGCTATGAA
AAATATGCCGAGGCACAAGCATGGTTAATCGATAGTGGCTTGACAATGCCAAACCTCTCTCTTGGAGGAACACCGTCCGT
GACGAAAACAGTTCCATTTAGCCGTTCTTACTCATTAGTTGGAATCAAAGGTGCTTCAAGCAGTTACTTTAAATATGTCA
AATTGCAAGACAAAATTGTAACAACAAAAGAATACGAAAGTGCTAAAAAGAAATGGCTAAAAGAAAAAGAAATCTCTAAT
AAAAAAGCACAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9F362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

57.382

100

0.578
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

57.23

100

0.577

Multiple sequence alignment