Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EHW89_RS01515 Genome accession   NZ_CP034543
Coordinates   290606..291652 (+) Length   348 a.a.
NCBI ID   WP_126466481.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 285606..296652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS01485 (EHW89_01485) tsaE 286979..287419 (+) 441 WP_003033807.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EHW89_RS01490 (EHW89_01490) - 287412..287933 (+) 522 WP_126466477.1 GNAT family N-acetyltransferase -
  EHW89_RS01495 (EHW89_01495) brpA 287940..289055 (+) 1116 WP_126466478.1 biofilm formation/cell division transcriptional regulator BrpA -
  EHW89_RS01500 (EHW89_01500) - 289102..289389 (-) 288 WP_126466479.1 hypothetical protein -
  EHW89_RS01505 (EHW89_01505) - 289399..289809 (-) 411 WP_049517075.1 HIT family protein -
  EHW89_RS01510 (EHW89_01510) pptA 289878..290609 (+) 732 WP_126466480.1 ABC transporter ATP-binding protein Regulator
  EHW89_RS01515 (EHW89_01515) pptB 290606..291652 (+) 1047 WP_126466481.1 ABC transporter permease Regulator
  EHW89_RS01520 (EHW89_01520) ccrZ 291703..292500 (+) 798 WP_049508676.1 cell cycle regulator CcrZ -
  EHW89_RS01525 (EHW89_01525) trmB 292497..293132 (+) 636 WP_126466482.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EHW89_RS01530 (EHW89_01530) - 293904..294593 (+) 690 WP_126468033.1 VIT family protein -
  EHW89_RS01535 (EHW89_01535) rimP 294844..295332 (+) 489 WP_126466483.1 ribosome maturation factor RimP -
  EHW89_RS01540 (EHW89_01540) nusA 295381..296574 (+) 1194 WP_101749749.1 transcription termination factor NusA -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 41039.39 Da        Isoelectric Point: 10.4750

>NTDB_id=331761 EHW89_RS01515 WP_126466481.1 290606..291652(+) (pptB) [Streptococcus periodonticum strain KCOM 2412]
MRNLFQKRRQVFRNQCLKYSRYVFNDHFVLFLLVFIGFLAVQYSQLLRNFPKNHLPIILALVVLLFLLLPLGRIATYMEK
PDSLFLLVKEEELKSYLQEQTRLSYRLWALLQTVVLLLLVPLFLALGMPLWGWFILVFLMLIAKWFVFLQKSQKFYQGAG
VNWSYLIAYEERRKQTILRFFALFTNVKGISNSVKRRAYLDGLTNILPKRQSTTWQNIYLRSYLRNGDFLALTIRLLFLS
LLGIGFISQSWIAAIFVALLNYLLLFQLTALYHAFDYQYLTFLFPLEINSKLKGVKQVIALIGYSVLFVETMMALLFFQD
RVALLFMIGITLLLYVIYLPFKLRSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=331761 EHW89_RS01515 WP_126466481.1 290606..291652(+) (pptB) [Streptococcus periodonticum strain KCOM 2412]
ATGAGAAATCTGTTTCAAAAGCGCAGGCAAGTATTTCGCAATCAATGTTTGAAGTATTCACGCTATGTTTTTAATGACCA
TTTTGTCCTCTTTTTATTGGTCTTTATTGGCTTTTTAGCTGTTCAATACAGTCAACTGTTACGAAATTTTCCTAAAAATC
ACCTGCCAATCATTCTTGCTTTAGTGGTTCTTTTGTTCTTATTATTGCCTTTGGGACGAATTGCGACTTATATGGAAAAA
CCAGATAGTTTATTTTTGTTAGTCAAAGAGGAGGAATTAAAAAGCTACCTACAAGAACAAACGCGTTTATCTTATCGATT
ATGGGCCTTGCTTCAAACCGTTGTGTTGTTACTATTAGTACCGCTTTTTCTTGCCTTAGGCATGCCGCTTTGGGGCTGGT
TTATTCTTGTTTTTCTTATGTTGATAGCAAAATGGTTCGTATTTTTGCAGAAAAGTCAAAAATTTTACCAGGGTGCAGGG
GTGAATTGGAGCTATCTCATTGCTTATGAAGAAAGACGTAAGCAGACAATCCTACGTTTCTTTGCTCTCTTTACCAATGT
CAAAGGAATTTCTAATAGTGTGAAACGCCGTGCGTATCTTGATGGTTTGACAAATATTCTACCAAAAAGACAGTCAACTA
CTTGGCAAAATATATATTTGCGTTCTTATTTACGAAATGGTGATTTTCTTGCCTTGACTATACGGTTGCTGTTTCTGTCT
CTTTTGGGAATTGGTTTTATCAGTCAATCGTGGATTGCTGCCATATTTGTGGCATTGTTAAATTATCTCCTGCTATTTCA
GTTGACAGCCTTGTACCATGCCTTTGATTACCAATATTTGACGTTCTTATTCCCTTTAGAAATCAACTCAAAGTTAAAAG
GAGTGAAACAAGTGATTGCTCTTATTGGCTACAGCGTGCTTTTTGTGGAAACAATGATGGCTTTGCTGTTTTTCCAAGAT
AGAGTAGCTTTGCTTTTTATGATAGGAATCACATTGCTACTCTATGTCATTTATTTACCATTCAAATTAAGAAGTTTGGT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.276

100

0.483

  pptB Streptococcus salivarius strain HSISS4

47.414

100

0.474


Multiple sequence alignment