Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FQR64_RS09665 Genome accession   NZ_CP042585
Coordinates   1897251..1897907 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain LD91-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892251..1902907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQR64_RS09635 (FQR64_09635) dcyD 1893131..1894117 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  FQR64_RS09640 (FQR64_09640) tcyL 1894132..1894800 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  FQR64_RS09645 (FQR64_09645) tcyN 1894797..1895549 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FQR64_RS09650 (FQR64_09650) sdiA 1895779..1896501 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  FQR64_RS09655 (FQR64_09655) yecF 1896568..1896792 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  FQR64_RS09660 (FQR64_09660) yecU 1896779..1896955 (-) 177 WP_000590347.1 protein YecU -
  FQR64_RS26345 - 1897038..1897109 (-) 72 Protein_1795 transcriptional regulator -
  FQR64_RS09665 (FQR64_09665) letA 1897251..1897907 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FQR64_RS09670 (FQR64_09670) uvrC 1897904..1899736 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FQR64_RS09675 (FQR64_09675) pgsA 1899793..1900341 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FQR64_RS09695 (FQR64_09695) yecA 1900991..1901656 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=331759 FQR64_RS09665 WP_000611335.1 1897251..1897907(+) (letA) [Escherichia coli strain LD91-1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=331759 FQR64_RS09665 WP_000611335.1 1897251..1897907(+) (letA) [Escherichia coli strain LD91-1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486