Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SPJ_RS08920 Genome accession   NC_012466
Coordinates   1712097..1713023 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1707097..1718023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS08900 (SPJ_1790) treR 1708206..1708916 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPJ_RS08905 (SPJ_1791) - 1708949..1709752 (-) 804 WP_000202632.1 ATP-binding cassette domain-containing protein -
  SPJ_RS08910 (SPJ_1792) - 1709765..1710658 (-) 894 WP_001012092.1 ABC transporter permease -
  SPJ_RS08915 (SPJ_1793) - 1710670..1711607 (-) 938 Protein_1701 ABC transporter substrate-binding protein -
  SPJ_RS13600 (SPJ_1795) - 1711900..1712031 (-) 132 WP_000787593.1 hypothetical protein -
  SPJ_RS08920 (SPJ_1796) amiF 1712097..1713023 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  SPJ_RS08925 (SPJ_1797) amiE 1713034..1714101 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  SPJ_RS08930 (SPJ_1798) amiD 1714110..1715036 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SPJ_RS08935 (SPJ_1799) amiC 1715036..1716532 (-) 1497 WP_000759903.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=33165 SPJ_RS08920 WP_001291293.1 1712097..1713023(-) (amiF) [Streptococcus pneumoniae JJA]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=33165 SPJ_RS08920 WP_001291293.1 1712097..1713023(-) (amiF) [Streptococcus pneumoniae JJA]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment