Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SPJ_RS08935 Genome accession   NC_012466
Coordinates   1715036..1716532 (-) Length   498 a.a.
NCBI ID   WP_000759903.1    Uniprot ID   A0A0I7G6D1
Organism   Streptococcus pneumoniae JJA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710036..1721532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS08915 (SPJ_1793) - 1710670..1711607 (-) 938 Protein_1701 ABC transporter substrate-binding protein -
  SPJ_RS13600 (SPJ_1795) - 1711900..1712031 (-) 132 WP_000787593.1 hypothetical protein -
  SPJ_RS08920 (SPJ_1796) amiF 1712097..1713023 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  SPJ_RS08925 (SPJ_1797) amiE 1713034..1714101 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  SPJ_RS08930 (SPJ_1798) amiD 1714110..1715036 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SPJ_RS08935 (SPJ_1799) amiC 1715036..1716532 (-) 1497 WP_000759903.1 ABC transporter permease Regulator
  SPJ_RS08940 (SPJ_1800) amiA3 1716599..1718578 (-) 1980 WP_000742238.1 peptide ABC transporter substrate-binding protein Regulator
  SPJ_RS08945 (SPJ_1801) - 1719264..1720457 (-) 1194 WP_000835616.1 O-antigen ligase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55625.14 Da        Isoelectric Point: 9.4436

>NTDB_id=33168 SPJ_RS08935 WP_000759903.1 1715036..1716532(-) (amiC) [Streptococcus pneumoniae JJA]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGA
LTFLLALPTIALVYIVRLIGSSISLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=33168 SPJ_RS08935 WP_000759903.1 1715036..1716532(-) (amiC) [Streptococcus pneumoniae JJA]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAACGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTTCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I7G6D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.908

100

0.769
  amiC Streptococcus thermophilus LMD-9

76.506

100

0.765

Multiple sequence alignment