Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPJ_RS08900 Genome accession   NC_012466
Coordinates   1708206..1708916 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae JJA     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703206..1713916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS08885 (SPJ_1787) - 1703747..1703995 (-) 249 WP_000364990.1 YneF family protein -
  SPJ_RS08890 (SPJ_1788) treC 1704251..1705876 (-) 1626 WP_000171200.1 alpha,alpha-phosphotrehalase -
  SPJ_RS08895 (SPJ_1789) treP 1706054..1708021 (-) 1968 WP_000514330.1 PTS system trehalose-specific EIIBC component -
  SPJ_RS08900 (SPJ_1790) treR 1708206..1708916 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPJ_RS08905 (SPJ_1791) - 1708949..1709752 (-) 804 WP_000202632.1 ATP-binding cassette domain-containing protein -
  SPJ_RS08910 (SPJ_1792) - 1709765..1710658 (-) 894 WP_001012092.1 ABC transporter permease -
  SPJ_RS08915 (SPJ_1793) - 1710670..1711607 (-) 938 Protein_1701 ABC transporter substrate-binding protein -
  SPJ_RS13600 (SPJ_1795) - 1711900..1712031 (-) 132 WP_000787593.1 hypothetical protein -
  SPJ_RS08920 (SPJ_1796) amiF 1712097..1713023 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=33164 SPJ_RS08900 WP_000760673.1 1708206..1708916(+) (treR) [Streptococcus pneumoniae JJA]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=33164 SPJ_RS08900 WP_000760673.1 1708206..1708916(+) (treR) [Streptococcus pneumoniae JJA]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment