Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FS836_RS17330 Genome accession   NZ_CP042352
Coordinates   3494200..3494832 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain RM9513     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489200..3499832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS836_RS17305 (FS836_17385) yheS 3489369..3491282 (+) 1914 WP_000634789.1 ABC transporter ATP-binding protein -
  FS836_RS17310 (FS836_17390) yheT 3491282..3492304 (+) 1023 WP_000057379.1 hydrolase -
  FS836_RS17315 (FS836_17395) yheU 3492298..3492516 (+) 219 WP_000907085.1 YheU family protein -
  FS836_RS17320 (FS836_17400) prkB 3492570..3493439 (+) 870 WP_001274680.1 phosphoribulokinase -
  FS836_RS17325 (FS836_17405) yhfA 3493494..3493898 (-) 405 WP_001148910.1 OsmC family protein -
  FS836_RS17330 (FS836_17410) crp 3494200..3494832 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FS836_RS17335 (FS836_17415) yhfK 3494883..3496973 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  FS836_RS17340 (FS836_17420) argD 3497040..3498260 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FS836_RS17345 (FS836_17425) pabA 3498346..3498909 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FS836_RS17350 (FS836_17430) fic 3498941..3499543 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FS836_RS17355 (FS836_17435) yhfG 3499533..3499700 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=331463 FS836_RS17330 WP_000242755.1 3494200..3494832(+) (crp) [Escherichia coli strain RM9513]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=331463 FS836_RS17330 WP_000242755.1 3494200..3494832(+) (crp) [Escherichia coli strain RM9513]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467