Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EJF26_RS08985 Genome accession   NZ_CP034442
Coordinates   1760026..1762008 (+) Length   660 a.a.
NCBI ID   WP_000842553.1    Uniprot ID   F9P1V5
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755026..1767008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08970 - 1755719..1756930 (+) 1212 WP_000685089.1 nucleotide sugar dehydrogenase -
  EJF26_RS08975 - 1756949..1758178 (+) 1230 WP_001130553.1 capsular polysaccharide biosynthesis protein CapF -
  EJF26_RS08980 - 1758179..1759363 (+) 1185 WP_000702706.1 UDP-N-acetyl glucosamine 2-epimerase -
  EJF26_RS08985 amiA3 1760026..1762008 (+) 1983 WP_000842553.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS08990 pbp1a 1762178..1764340 (-) 2163 WP_001041836.1 penicillin-binding protein PBP1A -
  EJF26_RS08995 recU 1764337..1764933 (-) 597 WP_000248772.1 Holliday junction resolvase RecU -
  EJF26_RS09000 - 1765000..1765527 (+) 528 WP_000205314.1 SLOG family protein -
  EJF26_RS09005 gpsB 1765597..1765926 (+) 330 WP_000146526.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73070.64 Da        Isoelectric Point: 4.6948

>NTDB_id=331397 EJF26_RS08985 WP_000842553.1 1760026..1762008(+) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
MKSSKLFALAGITLLASGVLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTGKAATADITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDALYLVQESIKGLDAYVKGEIKDFSQVG
IKALDDQTVQYTLNKPESFWNSKTTMGVMAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFAKNPNYWD
KDNVHIDKVKLSFWDGQDTNKPAEAFKDGSFTMARLFPTSASYPEIEKSFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPEKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSLKQSLEATLGTDNVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWAPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEEVN
DVSKRYEKYAAAQAWLTDSALLIPTTSKTGRPMLSKMVPFTLPFAYSGNKGTSEALLYKYLDVQDKPVTAEEYQKAQEKW
LKEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=331397 EJF26_RS08985 WP_000842553.1 1760026..1762008(+) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAAGTTCAAAACTATTTGCTCTTGCGGGTATAACTTTATTGGCATCTGGTGTTTTAGCTGCTTGTTCTGGATCAGG
TTCAAGCGCTAAAGGAGAGAAGACATTCTCATACATTTATGAAACAGACCCTGACAACCTGAACTATTTGACAACTGGTA
AGGCTGCGACAGCAGATATTACCAGTAACGTGGTTGATGGTTTGCTAGAAAATGATCGCTACGGGAACTTTGTGCCGTCT
ATGGCTGAGGATTGGTCTGTATCCAAGGATGGATTGACTTACACTTATACTATCCGTAAGGATGCAAAATGGTATACTTC
TGAAGGTGAAGAATACGCGGCAGTCAAAGCTCAAGACTTTGTAACAGGACTTAAGTATGCGGCTGATAAAAAATCAGATG
CTCTTTACCTTGTCCAAGAATCGATCAAAGGATTGGACGCCTATGTAAAAGGGGAAATCAAAGATTTCTCACAAGTAGGA
ATTAAGGCTCTGGATGATCAGACAGTTCAGTACACTTTGAACAAACCAGAAAGCTTCTGGAATTCTAAGACAACAATGGG
GGTAATGGCTCCAGTTAACGAAGAGTTTTTGAACTCTAAAGGGGATGATTTCGCCAAAGGGACAGATCCTAGTAGTATTC
TCTATAATGGACCATTCTTACTCAAATCGATTGTAGCCAAATCTTCTGTTGAATTTGCGAAAAATCCTAACTACTGGGAT
AAGGACAATGTCCATATCGATAAGGTTAAATTATCATTCTGGGATGGTCAAGATACCAACAAACCGGCTGAAGCCTTCAA
GGATGGAAGCTTTACTATGGCACGTCTCTTCCCAACAAGCGCTAGCTACCCAGAGATTGAGAAATCATTTAAAGATAACA
TCGTTTATACCCAACAGGATTCGACTACTTATTTAGTAGGTACGAATATTGATCGCCAGTCTTATAAGTATACTTCTAAG
ACAACGGATGAAGAAAAAACATCAACCAAGAAAGCTCTTCTAAACAAAGATTTCCGTCAAGCTCTTGCTTTTGGTTTTGA
TAGAACTGCCTATGCCTCTCAAGTAAACGGTGCAAGTGGTGCGACTAAACTGCTTCGTAACTTGTTTGTTCCACCTACAT
TTGTTCAAGCAGATGGCAAAAACTTTGGTGAGTTGGTCAAAGAAAAATTGGTGACATACGGTGACGAGTGGAGCAACGTG
AACTTGGATGATGCCCAAGATGGTCTCTACAATCCAGAAAAAGCCAAAGCAGAATTCGCAAAGGCTAAGACAGCTCTTCA
AGCAGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTGGACCAAACAAACACAACAAAAGTTCAACGTGTGCAAT
CTTTGAAACAGTCACTTGAAGCAACTTTGGGAACAGATAATGTAGTTGTGGATATCCAACAACTTCAAAAAGATGATGTA
TTGAACATCACTTACTTTGCCGAGACTGCTGCTGGTGAAGACTGGGATATCTCAGATAACGTTGGTTGGGCTCCAGACTT
TGCGGATCCATCTACCTACCTTGATATCATCAAGCCATCTGTCGGAGAAAATACAAAGACTTACCTAGGATTTGACTCTG
GAACCAACAATGCTGCGGCTAAGCAGGTTGGTTTGGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAGTGAAT
GACGTTTCAAAACGTTATGAAAAGTATGCAGCTGCCCAAGCTTGGTTGACAGACAGCGCCTTGCTCATCCCAACAACTTC
TAAAACTGGTCGTCCAATGTTGTCTAAGATGGTGCCATTTACTCTTCCGTTTGCTTACTCAGGTAACAAGGGTACGAGCG
AAGCCCTCTTGTATAAATACCTAGATGTACAAGATAAACCAGTGACAGCAGAAGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCTCAAGAAGATCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P1V5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.061

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.455

100

0.595
  amiA Streptococcus salivarius strain HSISS4

59.304

100

0.594

Multiple sequence alignment