Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EJF26_RS05990 Genome accession   NZ_CP034442
Coordinates   1191594..1193555 (-) Length   653 a.a.
NCBI ID   WP_000748552.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186594..1198555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05965 - 1186833..1187546 (-) 714 WP_000013636.1 hypothetical protein -
  EJF26_RS05970 - 1187738..1188073 (-) 336 WP_000701744.1 hypothetical protein -
  EJF26_RS05975 rnmV 1188167..1188733 (-) 567 WP_000659986.1 ribonuclease M5 -
  EJF26_RS05980 - 1188733..1189506 (-) 774 WP_000575631.1 TatD family hydrolase -
  EJF26_RS05985 - 1189658..1191502 (+) 1845 WP_000488834.1 APC family permease -
  EJF26_RS05990 amiA 1191594..1193555 (-) 1962 WP_000748552.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS05995 rpmH 1193699..1193833 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  EJF26_RS06000 - 1193979..1195193 (-) 1215 WP_000666480.1 pyridoxal phosphate-dependent aminotransferase -
  EJF26_RS06005 - 1195338..1195637 (-) 300 WP_000665208.1 hypothetical protein -
  EJF26_RS06010 - 1195804..1196256 (+) 453 WP_000079157.1 universal stress protein -
  EJF26_RS06015 - 1196292..1197677 (-) 1386 WP_000453131.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72892.93 Da        Isoelectric Point: 4.7426

>NTDB_id=331358 EJF26_RS05990 WP_000748552.1 1191594..1193555(-) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
MKKSKALLLGAGILSASFLMVACSSAQSNTDKTYSYVFASNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLVPSMA
QSWTVSKDGLTYTYKIRQGAKWYTSEGEEYAEVTAHDFVTGLKYAADKKAENLYLVRDSIKGLADYVEGKTSDFETVGVK
AVDDYTLQYTLNKPESYWNSKTTGGILSPVNEVFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFEKNPNYWDKDN
VKIEKVKLSFYDGSDQDSLARGFLEGNYTDGRIFPTSSVFDQLKKGNEDKITYTPQNAVTFYYLFNVNRQSYNQTMKQTD
KEKADSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQIGGKNFGDAVNEKIVNYGSEWANVNLN
DAQPAFLNADKAKAEFAKAKESLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGSDNIVIDVIQLSPDEKDNA
TFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPDSGSQLKNLGLTPGKDNDVKEKIGLSTYKKLLDKADKEVENTQVR
YEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYLELQKDPVTAKQYQELYEKWQKEKVES
NKKAQEDLANHIQ

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=331358 EJF26_RS05990 WP_000748552.1 1191594..1193555(-) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAGAAATCAAAAGCCCTCCTACTAGGGGCTGGAATTTTGAGCGCAAGCTTCTTGATGGTGGCTTGTAGTTCGGCACA
ATCAAATACAGATAAAACCTACTCGTATGTATTTGCTAGCAATCCAGATACATTAGACTATATCACTTCGACACGTGGTT
CAACCTCTAGCATTACGACAAACTTGATTGATGGTTTGTTGGAAAATGATAAGTACGGCAACCTCGTTCCTTCTATGGCG
CAGTCATGGACAGTATCAAAAGACGGTTTAACCTATACCTATAAAATCCGCCAAGGGGCTAAGTGGTATACCTCTGAAGG
AGAAGAGTACGCTGAAGTGACAGCCCATGACTTTGTGACAGGTCTTAAGTATGCAGCGGATAAAAAGGCTGAGAACTTGT
ACTTGGTACGGGATTCAATCAAAGGTTTGGCAGATTATGTCGAAGGGAAAACATCTGATTTTGAGACGGTTGGAGTCAAG
GCAGTGGACGACTATACTCTCCAATACACCTTGAACAAGCCAGAGTCTTATTGGAATTCAAAGACAACAGGGGGAATTTT
GAGTCCTGTCAATGAAGTCTTTTTGAAATCTAAGGGAGATGACTTTGGAAGTGTTACCCCATCTAGTATCCTGTCAAATG
GGCCATACTTGTTCAAGTCTTTCACATCAAAATCTTTAATTGAGTTTGAAAAGAACCCTAATTACTGGGATAAGGACAAT
GTGAAGATTGAGAAAGTAAAACTTTCCTTCTATGATGGTTCAGACCAAGATAGTTTAGCTCGAGGATTCTTAGAAGGCAA
CTACACAGACGGACGTATTTTCCCGACAAGCTCTGTGTTTGACCAGTTGAAAAAAGGGAATGAGGATAAAATTACTTATA
CCCCTCAAAATGCTGTGACTTTCTACTATCTCTTCAATGTCAACCGTCAAAGTTACAATCAAACCATGAAACAGACGGAT
AAAGAAAAGGCAGATTCTCGTGCAGCTATGCAAAATAAGGACTTCCGTCAGGCAATTAACTTTGCCTTTGACCGTCATGC
CTATGCCGCACAGACAAATGGAGAAGATGGAGCTGATCGTATCCTTCGAAACACAGTCACACCAAGCAATTTTGTTCAGA
TCGGTGGGAAAAACTTTGGAGATGCTGTCAATGAAAAGATAGTCAACTATGGTTCAGAGTGGGCTAATGTCAATCTAAAC
GACGCTCAGCCTGCCTTCTTGAATGCTGACAAAGCCAAGGCAGAATTTGCCAAAGCCAAAGAAAGTTTGCAAGCAGAAGG
TGTGACTTTCCCAATCCATCTAGACATGCCAGTGGACCAGACTGCTAAGTTGGACGTACAACAAGCCAGTTCTTTCAAGC
AGACGGTTGAGGAGACACTTGGATCAGATAATATTGTTATCGATGTGATTCAACTTTCTCCAGACGAGAAAGACAATGCA
ACCTTCTTTGCTGACACAGCTGAACAAAAGGACTATGACATTGACATCTCAGGCTGGAGCGGAGATTACTCTGATCCCAA
GACCTATCTTGACCTCTTGGATCCAGACTCTGGTTCTCAGCTAAAAAATCTTGGCTTGACTCCAGGAAAAGACAATGATG
TTAAGGAAAAAATCGGTCTCTCTACTTACAAGAAGTTGTTGGATAAGGCAGATAAAGAAGTTGAAAACACTCAGGTTCGC
TATGAGAAATTTGCCGAAGTTCAAGCTTGGCTAACAGATAGTGCTCTCTTTCTGCCAGTTCAAAGCGGAGGAGCTAATCC
AATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCATTTGTCGGACACAAAGGGGATGCGGACAACTACAAATACC
TTGAGTTGCAAAAAGATCCCGTGACTGCGAAACAGTACCAAGAGCTTTATGAAAAATGGCAAAAAGAAAAAGTTGAGTCC
AACAAAAAAGCTCAGGAAGATTTAGCTAACCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.403

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.251

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

54.947

100

0.553

Multiple sequence alignment