Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EJF26_RS04690 Genome accession   NZ_CP034442
Coordinates   917682..919640 (-) Length   652 a.a.
NCBI ID   WP_000748534.1    Uniprot ID   F9P3J2
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 912682..924640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS04680 - 915268..916434 (-) 1167 WP_000521330.1 MalY/PatB family protein -
  EJF26_RS04685 - 916442..917536 (-) 1095 WP_000032484.1 cystathionine gamma-synthase -
  EJF26_RS04690 amiA 917682..919640 (-) 1959 WP_000748534.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS10250 - 920280..920528 (-) 249 WP_185962796.1 LPXTG cell wall anchor domain-containing protein -
  EJF26_RS10255 - 920579..920950 (-) 372 WP_185962790.1 hypothetical protein -
  EJF26_RS10260 - 921208..922749 (+) 1542 WP_313904172.1 hypothetical protein -
  EJF26_RS10265 - 922817..922954 (-) 138 WP_313904173.1 hypothetical protein -
  EJF26_RS10270 - 922969..923127 (+) 159 WP_313904174.1 hypothetical protein -
  EJF26_RS10275 - 923495..923668 (-) 174 WP_313904175.1 hypothetical protein -
  EJF26_RS10280 - 923803..924153 (+) 351 WP_269642810.1 hypothetical protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72879.00 Da        Isoelectric Point: 4.7039

>NTDB_id=331347 EJF26_RS04690 WP_000748534.1 917682..919640(-) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
MKKSKAKYLTLASVVLSAGILLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKTS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=331347 EJF26_RS04690 WP_000748534.1 917682..919640(-) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTGGCAAGTGTCGTGTTAAGCGCGGGTATCCTACTAAGCGCATGTGGGAA
CTCAGCAAGTTCATCTAAAACATACAATTATGTTTACTCTAGTGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCGTTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCGGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACGGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTAATGAAATCTTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGATGTGAAATTGGCCTATTATGATGGTAGTGATCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTATACAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAATATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAATTTCACGTCTAAAACATCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACGAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGTCAAGAATGGCAAGGAATCAATTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCTAAGGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCTGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGTTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGCTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTAAGAAAGACAGTTCCATTCTCATCGCCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCGAAAGAAAAATGGCTAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P3J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.383

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.69

100

0.563

Multiple sequence alignment