Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EJN89_RS02430 Genome accession   NZ_CP034441
Coordinates   457613..458599 (-) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain PMB 81-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 452613..463599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN89_RS02405 - 452873..453220 (-) 348 WP_001242102.1 hypothetical protein -
  EJN89_RS02410 - 453406..453999 (+) 594 WP_000224612.1 CYTH domain-containing protein -
  EJN89_RS02415 - 454103..454468 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  EJN89_RS02420 yjbH 454491..455297 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  EJN89_RS02425 pepF 455757..457565 (-) 1809 WP_070957515.1 oligoendopeptidase F -
  EJN89_RS02430 coiA 457613..458599 (-) 987 WP_000959293.1 competence protein CoiA family protein Machinery gene
  EJN89_RS02435 mecA 458719..459438 (-) 720 WP_001217728.1 adaptor protein MecA -
  EJN89_RS02440 spxA 459809..460204 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  EJN89_RS02445 trpS 460499..461488 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  EJN89_RS02450 opp4C 461530..462411 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  EJN89_RS02455 opp4B 462423..463385 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=331287 EJN89_RS02430 WP_000959293.1 457613..458599(-) (coiA) [Staphylococcus aureus strain PMB 81-4]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=331287 EJN89_RS02430 WP_000959293.1 457613..458599(-) (coiA) [Staphylococcus aureus strain PMB 81-4]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment