Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EJO50_RS16610 Genome accession   NZ_CP034433
Coordinates   3771680..3772483 (+) Length   267 a.a.
NCBI ID   WP_125976039.1    Uniprot ID   A0A3S8ZWW3
Organism   Iodobacter ciconiae strain H11R3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3766680..3777483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJO50_RS16595 (EJO50_16595) - 3768914..3769843 (-) 930 WP_125976034.1 ZIP family metal transporter -
  EJO50_RS16600 (EJO50_16600) pgeF 3769893..3770618 (-) 726 WP_233702297.1 peptidoglycan editing factor PgeF -
  EJO50_RS16605 (EJO50_16605) rluD 3770632..3771681 (-) 1050 WP_125976037.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EJO50_RS16610 (EJO50_16610) comL 3771680..3772483 (+) 804 WP_125976039.1 outer membrane protein assembly factor BamD Machinery gene
  EJO50_RS16635 (EJO50_16635) tmk 3773050..3773688 (+) 639 WP_125976041.1 dTMP kinase -
  EJO50_RS16640 (EJO50_16640) holB 3773697..3774716 (+) 1020 WP_164521544.1 DNA polymerase III subunit delta' -
  EJO50_RS16645 (EJO50_16645) - 3774713..3775078 (+) 366 WP_125976045.1 PilZ domain-containing protein -
  EJO50_RS16650 (EJO50_16650) - 3775268..3776038 (+) 771 WP_125976047.1 TatD family hydrolase -
  EJO50_RS16655 (EJO50_16655) - 3776035..3776811 (+) 777 WP_125976049.1 MBL fold metallo-hydrolase -
  EJO50_RS16660 (EJO50_16660) - 3776820..3777008 (+) 189 WP_125976051.1 hypothetical protein -
  EJO50_RS16665 (EJO50_16665) - 3777023..3777271 (+) 249 WP_125976052.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30514.61 Da        Isoelectric Point: 8.0042

>NTDB_id=331230 EJO50_RS16610 WP_125976039.1 3771680..3772483(+) (comL) [Iodobacter ciconiae strain H11R3]
MNKILPRFVVSAVLAGLLAACASAPEEQDETRGWTAEKIFTEAKAEQDSRNFDRSNKLFEKLEARFPYGRHAQQAQIETA
YNHYKNQEPLLAFAAIDRFIKQYPAHPNIDYAYYLKGLVNFNEAQGFLSSLIKQDMSERDPKAARESFDTFRQLVTRFPD
SKYAADSTVRMGYLVGALASHELHVAKYYYNRGAFLAAANRGKYLLETYSSTKQVEPALGIMALAYDKLGLVELRDDAKK
VLFKNFPKSTVLDESTLFFDADWWKPW

Nucleotide


Download         Length: 804 bp        

>NTDB_id=331230 EJO50_RS16610 WP_125976039.1 3771680..3772483(+) (comL) [Iodobacter ciconiae strain H11R3]
ATGAATAAGATTCTACCGCGATTCGTCGTCTCTGCAGTACTTGCCGGATTACTGGCCGCTTGCGCATCCGCTCCTGAAGA
ACAGGATGAAACCCGTGGCTGGACGGCCGAGAAGATTTTTACCGAGGCAAAAGCAGAGCAGGACAGCCGTAATTTTGATC
GCTCAAACAAGCTGTTTGAAAAACTGGAGGCGCGCTTTCCGTATGGACGGCATGCCCAGCAGGCACAAATTGAAACTGCT
TATAACCATTATAAAAACCAGGAGCCCCTGCTGGCATTTGCGGCAATTGATCGCTTTATCAAGCAATATCCGGCACATCC
AAATATTGATTACGCCTACTATTTAAAGGGTTTGGTTAACTTTAATGAGGCACAAGGCTTTTTATCCAGCCTGATCAAGC
AGGATATGTCAGAGCGCGATCCTAAAGCTGCTCGTGAATCATTCGATACCTTTCGCCAGCTTGTTACGCGTTTTCCTGAC
AGTAAGTATGCGGCCGATTCAACTGTCCGCATGGGCTATCTGGTGGGCGCATTAGCGAGCCATGAATTGCATGTGGCCAA
GTACTACTACAACCGTGGTGCGTTCCTAGCAGCGGCCAATCGTGGTAAATATTTACTAGAAACGTATTCGAGTACCAAGC
AGGTAGAGCCAGCTTTAGGCATTATGGCTTTGGCTTACGATAAGCTTGGTTTGGTCGAGTTGCGGGATGATGCAAAAAAG
GTGTTATTTAAGAATTTTCCTAAAAGCACAGTTCTGGATGAATCCACTTTATTCTTCGATGCGGACTGGTGGAAGCCCTG
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S8ZWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

50

100

0.506
  comL Neisseria gonorrhoeae MS11

50

100

0.506

Multiple sequence alignment