Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | EJO50_RS15395 | Genome accession | NZ_CP034433 |
| Coordinates | 3493325..3494674 (+) | Length | 449 a.a. |
| NCBI ID | WP_125975638.1 | Uniprot ID | A0A3S8ZW75 |
| Organism | Iodobacter ciconiae strain H11R3 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3488325..3499674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJO50_RS15375 (EJO50_15375) | ttcA | 3489090..3490019 (+) | 930 | WP_125975631.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| EJO50_RS15380 (EJO50_15380) | - | 3490019..3490801 (+) | 783 | WP_125975633.1 | fused MFS/spermidine synthase | - |
| EJO50_RS15385 (EJO50_15385) | - | 3490901..3491416 (+) | 516 | WP_125975635.1 | RNA pyrophosphohydrolase | - |
| EJO50_RS15390 (EJO50_15390) | - | 3491636..3493222 (+) | 1587 | WP_125975637.1 | PAS domain-containing sensor histidine kinase | - |
| EJO50_RS15395 (EJO50_15395) | pilR | 3493325..3494674 (+) | 1350 | WP_125975638.1 | sigma-54 dependent transcriptional regulator | Regulator |
| EJO50_RS15400 (EJO50_15400) | ampD | 3494690..3495268 (+) | 579 | WP_125975640.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EJO50_RS15405 (EJO50_15405) | - | 3495300..3497195 (+) | 1896 | WP_125975643.1 | potassium transporter Kup | - |
| EJO50_RS15410 (EJO50_15410) | - | 3497387..3497983 (-) | 597 | WP_125975645.1 | 6-carboxytetrahydropterin synthase | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49353.75 Da Isoelectric Point: 5.5315
>NTDB_id=331229 EJO50_RS15395 WP_125975638.1 3493325..3494674(+) (pilR) [Iodobacter ciconiae strain H11R3]
MAKKINKNSKRVLVVDDEHDLAELLELTLIKMGLDVDCAYGVQDACARLDRAAYDLCLTDMRMPDGEGLEIIRHIQAKGM
DVPVAVITAYGSTDNAVAALKAGAFDYLAKPVALDQLRLLVKSALALDDMLVLDVSDRPLLGESAAMQHTLELISKLAKS
QAPVYVTGESGSGKERAARLIHGSSSRAKQPFVAVNCGAIPENLMESEFFGHKKGAFTGANEDRDGFFHAANGGTLFLDE
VADLPLAMQVKLLRVIQERKVRKLGATAEDALDVRIISATHQSLSQCVEAGRFRQDLYYRLNVIELRMPALREMGSDVLV
IARHVLARVAKLNGQKLPDFAADALTALQRYDFPGNVRELENVLERALALADGCAITAADLQLSLSDHEDEEGLDLGEKF
PLQDYLDRVEKQAILEALEKTRFNRTQAAKILGLTFRSLRYRLDRLGIQ
MAKKINKNSKRVLVVDDEHDLAELLELTLIKMGLDVDCAYGVQDACARLDRAAYDLCLTDMRMPDGEGLEIIRHIQAKGM
DVPVAVITAYGSTDNAVAALKAGAFDYLAKPVALDQLRLLVKSALALDDMLVLDVSDRPLLGESAAMQHTLELISKLAKS
QAPVYVTGESGSGKERAARLIHGSSSRAKQPFVAVNCGAIPENLMESEFFGHKKGAFTGANEDRDGFFHAANGGTLFLDE
VADLPLAMQVKLLRVIQERKVRKLGATAEDALDVRIISATHQSLSQCVEAGRFRQDLYYRLNVIELRMPALREMGSDVLV
IARHVLARVAKLNGQKLPDFAADALTALQRYDFPGNVRELENVLERALALADGCAITAADLQLSLSDHEDEEGLDLGEKF
PLQDYLDRVEKQAILEALEKTRFNRTQAAKILGLTFRSLRYRLDRLGIQ
Nucleotide
Download Length: 1350 bp
>NTDB_id=331229 EJO50_RS15395 WP_125975638.1 3493325..3494674(+) (pilR) [Iodobacter ciconiae strain H11R3]
ATGGCTAAAAAAATCAATAAAAACAGTAAGCGTGTACTGGTGGTTGACGATGAGCATGATCTTGCTGAGCTGCTGGAACT
TACGCTCATAAAAATGGGGCTGGATGTAGATTGTGCTTATGGAGTGCAAGATGCATGTGCAAGGCTAGATCGTGCGGCGT
ATGACCTGTGCCTTACCGATATGCGGATGCCCGATGGTGAGGGGCTGGAAATCATCCGGCATATTCAAGCAAAAGGAATG
GATGTGCCGGTGGCAGTGATTACTGCCTATGGCAGTACTGACAATGCGGTGGCGGCGCTAAAAGCAGGCGCATTTGATTA
CCTGGCTAAACCGGTGGCTTTGGATCAGCTGCGTTTATTGGTTAAATCGGCTTTAGCCCTTGATGATATGCTGGTGTTGG
ATGTGAGCGATCGCCCTTTATTGGGTGAATCTGCCGCCATGCAGCACACATTGGAGCTGATTTCCAAATTGGCTAAAAGT
CAGGCTCCTGTTTATGTAACGGGAGAATCCGGCTCTGGCAAAGAGCGGGCTGCGCGTTTGATCCACGGCAGCTCCAGCCG
TGCCAAGCAGCCTTTTGTGGCAGTAAATTGTGGGGCTATTCCTGAAAATTTAATGGAAAGTGAATTTTTCGGACATAAAA
AAGGTGCTTTTACTGGCGCAAATGAAGACAGAGATGGTTTTTTTCATGCCGCAAATGGCGGTACCTTGTTTTTAGATGAG
GTGGCTGATCTTCCGCTTGCCATGCAGGTCAAACTATTACGGGTGATTCAGGAACGTAAAGTGCGCAAACTGGGGGCGAC
GGCCGAGGATGCGCTGGATGTGCGGATTATCTCTGCCACGCACCAAAGTCTGAGCCAGTGTGTGGAAGCAGGGCGGTTCA
GGCAGGATTTATATTATCGCCTGAATGTGATTGAGCTGCGTATGCCGGCTTTAAGGGAAATGGGCAGTGATGTCTTGGTG
ATTGCCCGGCATGTGCTGGCGAGAGTGGCTAAGTTAAATGGCCAGAAGTTACCTGACTTTGCTGCAGATGCACTCACTGC
ACTTCAGCGCTACGATTTTCCTGGCAATGTGCGCGAGCTGGAAAACGTACTGGAGCGTGCTCTGGCTCTGGCTGATGGAT
GCGCTATTACGGCGGCGGATTTGCAACTTAGCCTTAGCGATCATGAGGATGAAGAAGGGCTGGATCTGGGGGAAAAATTC
CCTTTGCAGGATTATTTGGATCGGGTTGAGAAGCAGGCCATTCTAGAGGCTCTGGAAAAAACACGGTTTAACCGTACTCA
GGCCGCTAAAATACTCGGCCTCACTTTCCGAAGCCTGCGTTATCGCCTAGACCGGTTGGGAATTCAGTAA
ATGGCTAAAAAAATCAATAAAAACAGTAAGCGTGTACTGGTGGTTGACGATGAGCATGATCTTGCTGAGCTGCTGGAACT
TACGCTCATAAAAATGGGGCTGGATGTAGATTGTGCTTATGGAGTGCAAGATGCATGTGCAAGGCTAGATCGTGCGGCGT
ATGACCTGTGCCTTACCGATATGCGGATGCCCGATGGTGAGGGGCTGGAAATCATCCGGCATATTCAAGCAAAAGGAATG
GATGTGCCGGTGGCAGTGATTACTGCCTATGGCAGTACTGACAATGCGGTGGCGGCGCTAAAAGCAGGCGCATTTGATTA
CCTGGCTAAACCGGTGGCTTTGGATCAGCTGCGTTTATTGGTTAAATCGGCTTTAGCCCTTGATGATATGCTGGTGTTGG
ATGTGAGCGATCGCCCTTTATTGGGTGAATCTGCCGCCATGCAGCACACATTGGAGCTGATTTCCAAATTGGCTAAAAGT
CAGGCTCCTGTTTATGTAACGGGAGAATCCGGCTCTGGCAAAGAGCGGGCTGCGCGTTTGATCCACGGCAGCTCCAGCCG
TGCCAAGCAGCCTTTTGTGGCAGTAAATTGTGGGGCTATTCCTGAAAATTTAATGGAAAGTGAATTTTTCGGACATAAAA
AAGGTGCTTTTACTGGCGCAAATGAAGACAGAGATGGTTTTTTTCATGCCGCAAATGGCGGTACCTTGTTTTTAGATGAG
GTGGCTGATCTTCCGCTTGCCATGCAGGTCAAACTATTACGGGTGATTCAGGAACGTAAAGTGCGCAAACTGGGGGCGAC
GGCCGAGGATGCGCTGGATGTGCGGATTATCTCTGCCACGCACCAAAGTCTGAGCCAGTGTGTGGAAGCAGGGCGGTTCA
GGCAGGATTTATATTATCGCCTGAATGTGATTGAGCTGCGTATGCCGGCTTTAAGGGAAATGGGCAGTGATGTCTTGGTG
ATTGCCCGGCATGTGCTGGCGAGAGTGGCTAAGTTAAATGGCCAGAAGTTACCTGACTTTGCTGCAGATGCACTCACTGC
ACTTCAGCGCTACGATTTTCCTGGCAATGTGCGCGAGCTGGAAAACGTACTGGAGCGTGCTCTGGCTCTGGCTGATGGAT
GCGCTATTACGGCGGCGGATTTGCAACTTAGCCTTAGCGATCATGAGGATGAAGAAGGGCTGGATCTGGGGGAAAAATTC
CCTTTGCAGGATTATTTGGATCGGGTTGAGAAGCAGGCCATTCTAGAGGCTCTGGAAAAAACACGGTTTAACCGTACTCA
GGCCGCTAAAATACTCGGCCTCACTTTCCGAAGCCTGCGTTATCGCCTAGACCGGTTGGGAATTCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
56.885 |
98.664 |
0.561 |
| pilR | Acinetobacter baumannii strain A118 |
45.633 |
100 |
0.465 |
| luxO | Vibrio cholerae strain A1552 |
38.702 |
99.555 |
0.385 |