Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   E3B71_RS16825 Genome accession   NZ_CP042336
Coordinates   3011728..3012318 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain GZ04-0086     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006728..3017318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3B71_RS16810 (E3B71_14960) uhpT 3007368..3008759 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  E3B71_RS16815 (E3B71_14965) uhpC 3008897..3010216 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  E3B71_RS16820 (E3B71_14970) uhpB 3010226..3011728 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  E3B71_RS16825 (E3B71_14975) letA 3011728..3012318 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  E3B71_RS16830 (E3B71_14980) ilvN 3012394..3012684 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  E3B71_RS16835 (E3B71_14985) ilvB 3012688..3014376 (-) 1689 WP_000168475.1 acetolactate synthase large subunit -
  E3B71_RS16840 (E3B71_14990) ivbL 3014482..3014580 (-) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  E3B71_RS16845 (E3B71_14995) tisB 3015145..3015234 (+) 90 WP_001054909.1 type I toxin-antitoxin system toxin TisB -
  E3B71_RS27865 ysdE 3015358..3015432 (-) 75 WP_211180519.1 protein YsdE -
  E3B71_RS16850 (E3B71_15000) emrD 3015514..3016698 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  E3B71_RS16855 (E3B71_15005) yidF 3016706..3017203 (-) 498 WP_000148061.1 radical SAM protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=331117 E3B71_RS16825 WP_000633668.1 3011728..3012318(-) (letA) [Escherichia coli strain GZ04-0086]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=331117 E3B71_RS16825 WP_000633668.1 3011728..3012318(-) (letA) [Escherichia coli strain GZ04-0086]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment