Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FKV26_RS10695 Genome accession   NZ_CP042299
Coordinates   2382913..2384991 (+) Length   692 a.a.
NCBI ID   WP_000080585.1    Uniprot ID   -
Organism   Vibrio cholerae O1 strain AAS91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2377913..2389991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV26_RS10675 (FKV26_10960) - 2378604..2379275 (-) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  FKV26_RS10680 (FKV26_10965) gmk 2379643..2380266 (+) 624 WP_000515793.1 guanylate kinase -
  FKV26_RS10685 (FKV26_10970) rpoZ 2380374..2380646 (+) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  FKV26_RS10690 (FKV26_10975) spoT 2380678..2382795 (+) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FKV26_RS10695 (FKV26_10980) recG 2382913..2384991 (+) 2079 WP_000080585.1 ATP-dependent DNA helicase RecG Machinery gene
  FKV26_RS10700 (FKV26_10985) - 2385336..2386736 (+) 1401 WP_000193497.1 uracil-xanthine permease family protein -
  FKV26_RS10705 (FKV26_10990) envZ 2386761..2388077 (-) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  FKV26_RS10710 (FKV26_10995) ompR 2388146..2388868 (-) 723 WP_000230023.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76935.11 Da        Isoelectric Point: 7.5643

>NTDB_id=331050 FKV26_RS10695 WP_000080585.1 2382913..2384991(+) (recG) [Vibrio cholerae O1 strain AAS91]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=331050 FKV26_RS10695 WP_000080585.1 2382913..2384991(+) (recG) [Vibrio cholerae O1 strain AAS91]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACGCTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGGGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCGCAAACGCCCGATGTTGAGCCAAACCTCACTCCGGTTTACCCAACCACCGAAGGGCTACGCCAACTC
ACTCTACGTAATCTCACTGACCAAGCGTTAGCGCTGCTTGAGAAATCTGCGGTGCAAGAATTACTGCCGTCTGGGCTTTA
CGATCAGCAGATGACCTTGGCCCAAGCGCTGAAAATCATTCATCGCCCTTCGGCGGATATCGATTTACGTCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCCATGCTGGCGATTCGCAGT
CAAGGCCAACAAGATGTGGCCTTACCACTGGCCCCCGTCCACCAACTCAAACAACAACTCTTGGCACAATTGCCCTTTTC
TCCGACTAAGGCGCAGCAGCGTGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCGCATCCCATGATGCGCTTAGTGC
AAGGCGATGTGGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTCGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCTCTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCGGTGATTGATGAGTTGCCACCCGGAC
GTACCCCAATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTAATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
AGAAGAGCTGCAACGCAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCGGCTGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTTGCCACTACAGTGATTGAAGTGGGCGTGGATGTCCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGGCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTGGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCACGCCATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAGCGCGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-171)

DEAD/DEAH box helicase (DEAD)

(271-432)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37

Multiple sequence alignment