Detailed information NTG0330986

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EI420_RS10070
• Genome accession: NZ_CP034367
• Coordinates: 2111909..2112754 (+)
• Length: 281 a.a.
• NCBI ID: WP_125748118.1
• Uniprot ID: -
• Organism: Vreelandella venusta strain MA-ZP17-13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2106909..2117754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EI420_RS10050 (EI420_10050)	-	2107635..2108090 (-)	456	WP_125748112.1	anti-virulence regulator CigR family protein	-
EI420_RS20830 (EI420_10055)	-	2108255..2108647 (-)	393	WP_167468857.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
EI420_RS10060 (EI420_10060)	pilB	2108906..2110618 (+)	1713	WP_240645179.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EI420_RS10065 (EI420_10065)	-	2110625..2111854 (+)	1230	WP_125748115.1	type II secretion system F family protein	-
EI420_RS10070 (EI420_10070)	pilD	2111909..2112754 (+)	846	WP_125748118.1	A24 family peptidase	Machinery gene
EI420_RS10075 (EI420_10075)	coaE	2112795..2113391 (+)	597	WP_125748121.1	dephospho-CoA kinase	-
EI420_RS10080 (EI420_10080)	yacG	2113431..2113664 (+)	234	WP_125748124.1	DNA gyrase inhibitor YacG	-
EI420_RS10085 (EI420_10085)	-	2113678..2114550 (+)	873	WP_125748127.1	DNA replication terminus site-binding protein	-
EI420_RS10090 (EI420_10090)	-	2114582..2114923 (-)	342	WP_125748130.1	hypothetical protein	-
EI420_RS10095 (EI420_10095)	-	2115294..2116127 (+)	834	WP_125748133.1	helix-turn-helix transcriptional regulator	-
EI420_RS10100 (EI420_10100)	-	2116206..2116580 (-)	375	WP_125748137.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30943.30 Da
• Isoelectric Point: 8.8458

>NTDB_id=330986 EI420_RS10070 WP_125748118.1 2111909..2112754(+) (pilD) [Vreelandella venusta strain MA-ZP17-13]
MGLPSNCYLFFALLIGLCFGSFLNVVITRLPVMLMRRWRNEARVSLELVEETSPRFNLATPRSMCPRCEQPIAWHDNLPL
IGWLKRRGKCAHCQTSISVQYPFVELMGGLLAVVVVALHGPTLNAMFIYGACVTLLALAVIDFRTYLLPDMLTLPLLWAG
LVYQLLFQPQLLSGAVIGAMAGYLVLWAFYWAFKLITGKKGMGFGDFKLLAALGAWVGWSMLPLLLILSAGIGAAIGLAA
QTLFPQLRGQPLPFGPFLALAGWICILVGNELMALYTSLLY

Nucleotide

• Length: 846 bp

>NTDB_id=330986 EI420_RS10070 WP_125748118.1 2111909..2112754(+) (pilD) [Vreelandella venusta strain MA-ZP17-13]
ATGGGTTTACCGTCAAACTGTTACCTCTTTTTTGCTTTACTAATCGGCCTCTGCTTTGGCAGTTTTCTTAACGTTGTCAT
CACTCGTTTACCCGTTATGCTAATGCGCCGTTGGCGTAATGAAGCACGCGTCTCTCTTGAGCTGGTCGAAGAAACATCCC
CCCGCTTTAACCTTGCTACGCCAAGGTCAATGTGTCCACGCTGCGAACAACCCATTGCCTGGCACGATAACCTACCTTTA
ATAGGCTGGCTAAAAAGAAGGGGAAAATGCGCCCATTGCCAAACCTCCATCAGTGTACAGTACCCCTTCGTTGAGCTGAT
GGGCGGACTACTTGCAGTAGTCGTTGTGGCCTTGCATGGCCCAACGCTAAACGCAATGTTTATCTATGGCGCTTGTGTCA
CGCTACTGGCCTTGGCAGTAATCGACTTTCGTACCTATTTACTCCCTGATATGTTAACCCTTCCGCTATTATGGGCTGGC
TTAGTTTACCAATTACTCTTTCAGCCACAGCTGCTTTCTGGCGCTGTCATCGGCGCAATGGCGGGCTATCTTGTGCTATG
GGCTTTCTACTGGGCTTTTAAGCTCATAACAGGTAAAAAAGGCATGGGGTTCGGTGATTTCAAATTACTCGCTGCTCTTG
GCGCCTGGGTAGGTTGGAGCATGTTACCGTTGCTGCTTATTTTATCTGCGGGAATTGGCGCAGCCATAGGATTAGCCGCT
CAAACTCTATTTCCTCAACTGCGCGGCCAACCTCTCCCCTTTGGTCCCTTTCTTGCGCTGGCGGGCTGGATTTGCATACT
GGTAGGCAACGAGTTAATGGCGCTCTATACGTCGTTGCTGTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

• Type IV leader peptidase family (Peptidase_A24) (132-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.182	97.865	0.491
pilD	Acinetobacter nosocomialis M2	46.642	95.374	0.445
pilD	Acinetobacter baumannii D1279779	46.642	95.374	0.445
pilD	Vibrio campbellii strain DS40M4	44.043	98.577	0.434
pilD	Neisseria gonorrhoeae MS11	44.906	94.306	0.423