Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FQB22_RS17135 Genome accession   NZ_CP042252
Coordinates   3342858..3344906 (+) Length   682 a.a.
NCBI ID   WP_003181696.1    Uniprot ID   -
Organism   Bacillus licheniformis strain KNU11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3337858..3349906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS17105 spoVM 3338405..3338485 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  FQB22_RS17110 rpmB 3338590..3338778 (-) 189 WP_003181685.1 50S ribosomal protein L28 -
  FQB22_RS17115 - 3339066..3339428 (+) 363 WP_003181687.1 Asp23/Gls24 family envelope stress response protein -
  FQB22_RS17120 - 3339446..3341116 (+) 1671 WP_003181689.1 DAK2 domain-containing protein -
  FQB22_RS17125 sdaAB 3341297..3341959 (+) 663 WP_003181691.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  FQB22_RS17130 sdaAA 3341978..3342880 (+) 903 WP_003181693.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  FQB22_RS17135 recG 3342858..3344906 (+) 2049 WP_003181696.1 ATP-dependent DNA helicase RecG Machinery gene
  FQB22_RS17140 fapR 3345023..3345589 (+) 567 WP_003181698.1 transcription factor FapR -
  FQB22_RS17145 plsX 3345607..3346599 (+) 993 WP_003181700.1 phosphate acyltransferase PlsX -
  FQB22_RS17150 fabD 3346617..3347576 (+) 960 WP_003181702.1 ACP S-malonyltransferase -
  FQB22_RS17155 fabG 3347563..3348306 (+) 744 WP_003181704.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  FQB22_RS17160 acpP 3348383..3348616 (+) 234 WP_003181706.1 acyl carrier protein -
  FQB22_RS17165 rnc 3348758..3349507 (+) 750 WP_009328527.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77613.10 Da        Isoelectric Point: 7.3550

>NTDB_id=330742 FQB22_RS17135 WP_003181696.1 3342858..3344906(+) (recG) [Bacillus licheniformis strain KNU11]
MEHNLQLSISVIKGVGTETEKTLNELGIYTVLDLLNYFPYRYDDYELRDLEDVAHDERVTVEGKVHSEPSLAYYGKKRSR
LTFRLLVGNYLITAVCFNRPYLKKKLAIGSIVTVTGKWDKHRQSVMVQELKNGPHQGDQSIEPVYSVKENITVKTMRKLI
QEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESREALKHARRRFVYEEFLLFQLKMQALRKFEREASDGISHT
FRLEDVNSFVKSLPFPLTNAQAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASLLSGFQGAMMVPTEILAEQ
HADSLVSLFEQHDVNVALLTSSVKGKRRRELLDRLKEGEIDILVGTHALIQDDVHFKQLGLVITDEQHRFGVEQRKKLRS
KGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESD
KLDVQNAIDVHSMLTHAFRGRWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS
QLHQLRGRVGRGDHQSYCILMADPKSETGKERMSIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARRDAAELVSSKAFWTDAEYKSLREHLQNSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=330742 FQB22_RS17135 WP_003181696.1 3342858..3344906(+) (recG) [Bacillus licheniformis strain KNU11]
GTGGAACACAATCTGCAACTTAGTATATCTGTTATAAAAGGCGTCGGGACGGAAACGGAAAAAACGTTGAACGAGCTCGG
AATCTATACGGTTCTCGATCTTTTAAACTACTTCCCGTACCGATATGACGATTATGAATTGCGCGATTTGGAAGATGTGG
CACACGATGAACGAGTGACGGTGGAAGGGAAGGTTCACAGCGAGCCTTCTCTTGCCTATTACGGGAAAAAGCGGAGCCGT
CTCACGTTCCGGCTTTTGGTCGGGAACTATTTGATCACAGCGGTTTGCTTTAACAGGCCTTATTTGAAAAAAAAGCTTGC
GATCGGCTCGATTGTTACCGTAACCGGAAAATGGGACAAGCACAGACAATCCGTGATGGTGCAAGAGCTGAAAAACGGGC
CGCACCAGGGTGATCAGTCGATTGAACCCGTATACTCCGTCAAAGAAAACATCACCGTAAAGACGATGAGGAAATTGATT
CAGGAAGCTGTCCGCAGCCATTTGCCGTTTGCCGAAGATCCTCTTCCGGAAAAGCTTCGGACCGCCTACAAACTTCTGTC
TTACCAGGAGGCGGTAAAGGCGATGCACAAGCCCGAGTCGAGGGAAGCTTTAAAGCATGCGCGGCGCCGTTTTGTATATG
AGGAATTTTTGCTGTTTCAGCTGAAAATGCAGGCTTTGCGAAAGTTCGAGCGGGAAGCGTCCGACGGAATCAGCCACACC
TTTCGGCTCGAAGACGTCAATTCGTTTGTCAAAAGCCTTCCGTTTCCTTTGACAAACGCGCAGGCGAAAGCGCTCGACGA
CATATTAAGGGACATGGCTTCAGGGTATAAAATGAATCGGCTTTTGCAAGGAGACGTCGGTTCAGGCAAAACAGCCGTCG
CCGCGATTGCGCTATACGCCTCGCTGCTTTCCGGATTCCAGGGGGCGATGATGGTTCCGACCGAAATACTGGCGGAACAG
CACGCCGATTCGCTTGTATCCCTCTTTGAGCAGCACGACGTCAATGTGGCGCTTTTAACAAGCTCTGTGAAAGGGAAAAG
GAGAAGAGAGCTTTTAGACAGATTAAAAGAAGGAGAAATTGATATTTTGGTGGGGACGCACGCCCTTATTCAGGACGATG
TCCACTTTAAACAGCTCGGGCTCGTGATCACCGATGAACAGCACCGCTTCGGCGTCGAGCAAAGAAAAAAACTGAGAAGC
AAAGGGAAAGATCCCGATGTCTTGTTTATGACGGCGACGCCGATTCCGAGAACACTGGCGATCACGGTTTTCGGGGAAAT
GGATGTGTCCGTCATCGATGAAATGCCGGCTGGGCGAAAGCGGATCGAGACGTATTGGGTAAAGCACGACATGCTCGAAC
GGATTCTCGCGTTTATCGATAAAGAACTGAAAAAAGGCAGACAGGCGTATGTGATCTGTCCCTTGATTGAAGAGTCGGAC
AAGCTCGACGTTCAAAATGCAATTGATGTGCACAGCATGCTGACTCATGCCTTCAGGGGAAGATGGCAGATCGGTCTCAT
GCACGGAAAGCTGTCAAATGACGAGAAAGAACAGGTAATGAGGCAGTTCAGCAAAAACGAATGCCAGATTCTCGTTTCCA
CAACCGTCGTTGAAGTCGGGGTAAACGTTCCGAATGCGACGGTCATGCTGATCTATGATGCCGACCGGTTCGGTCTTTCC
CAGCTGCATCAGCTTCGCGGCCGGGTCGGACGGGGCGATCACCAGTCGTATTGCATCCTGATGGCAGACCCGAAATCTGA
GACGGGAAAAGAGCGCATGAGCATCATGTCTGAGACGACGGACGGCTTTGAGCTTTCTGAAAAAGATCTTGAACTCAGAG
GGCCCGGGGACTTTTTCGGCAAGAAACAGAGCGGGATGCCGGAGTTTAAAGTCGCCGACATGGTTCACGACTACCGCGCG
CTGGAAACGGCAAGAAGAGACGCTGCAGAACTTGTCTCTTCAAAAGCGTTCTGGACGGATGCCGAATATAAAAGCCTGCG
GGAACACTTGCAAAACAGCGGGGTTATGGACGGAGAAAAGCTGAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(258-415)

RecG wedge domain (RecG_wedge)

(9-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-672)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

80.938

100

0.809
  recG/mmsA Streptococcus pneumoniae R6

49.037

98.974

0.485
  recG/mmsA Streptococcus pneumoniae R36A

49.037

98.974

0.485
  recG Neisseria meningitidis strain C311

39.445

95.161

0.375