Detailed information NTG0033072

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HPPC_RS04265
• Genome accession: NC_014555
• Coordinates: 891685..892236 (-)
• Length: 183 a.a.
• NCBI ID: WP_000635179.1
• Uniprot ID: -
• Organism: Helicobacter pylori PeCan4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 886685..897236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPC_RS04235 (HPPC_04430)	ruvC	888229..888702 (-)	474	WP_000547784.1	crossover junction endodeoxyribonuclease RuvC	-
HPPC_RS04240 (HPPC_04435)	-	888833..889558 (+)	726	WP_000646749.1	NYN domain-containing protein	-
HPPC_RS08720	-	890180..891652 (-)	1473	Protein_836	DUF3519 domain-containing protein	-
HPPC_RS04265 (HPPC_04450)	ruvA	891685..892236 (-)	552	WP_000635179.1	Holliday junction branch migration protein RuvA	Machinery gene
HPPC_RS04270 (HPPC_04455)	-	892262..894106 (-)	1845	WP_000051286.1	FapA family protein	-
HPPC_RS04275 (HPPC_04460)	murJ	894199..895659 (+)	1461	WP_000913470.1	murein biosynthesis integral membrane protein MurJ	-
HPPC_RS04280 (HPPC_04465)	cysS	895660..897057 (+)	1398	WP_000471302.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20242.95 Da
• Isoelectric Point: 9.4135

>NTDB_id=33072 HPPC_RS04265 WP_000635179.1 891685..892236(-) (ruvA) [Helicobacter pylori PeCan4]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETKPMHNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide

• Length: 552 bp

>NTDB_id=33072 HPPC_RS04265 WP_000635179.1 891685..892236(-) (ruvA) [Helicobacter pylori PeCan4]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATCAAAG
AAGATGCGCATCTCTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCACCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACAAAACCCATGCATAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (140-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	94.536	100	0.945
ruvA	Streptococcus pneumoniae TIGR4	33.846	100	0.361
ruvA	Streptococcus pneumoniae R6	33.846	100	0.361
ruvA	Streptococcus pneumoniae D39	33.846	100	0.361