Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FQB22_RS02000 Genome accession   NZ_CP042252
Coordinates   383809..384810 (-) Length   333 a.a.
NCBI ID   WP_003184445.1    Uniprot ID   Q65G28
Organism   Bacillus licheniformis strain KNU11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 378809..389810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS01975 - 379699..380331 (+) 633 WP_003184432.1 GNAT family N-acetyltransferase -
  FQB22_RS01980 - 380353..380997 (+) 645 WP_003184434.1 acetoin utilization AcuB family protein -
  FQB22_RS01985 - 380994..382154 (+) 1161 WP_016885599.1 acetoin utilization protein AcuC -
  FQB22_RS01990 motS 382216..382905 (-) 690 WP_003184438.1 flagellar motor protein MotS -
  FQB22_RS01995 motP 382895..383713 (-) 819 WP_011198198.1 flagellar motor protein MotP -
  FQB22_RS02000 ccpA 383809..384810 (-) 1002 WP_003184445.1 catabolite control protein A Regulator
  FQB22_RS02005 - 385116..386192 (-) 1077 WP_003184447.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  FQB22_RS02010 - 386402..386851 (-) 450 WP_003184449.1 hypothetical protein -
  FQB22_RS02015 ytxJ 387001..387327 (-) 327 WP_003184451.1 bacillithiol system redox-active protein YtxJ -
  FQB22_RS02020 - 387348..387764 (-) 417 WP_003184452.1 YtxH domain-containing protein -
  FQB22_RS02025 - 387768..388190 (-) 423 WP_003184453.1 DUF948 domain-containing protein -
  FQB22_RS02030 murC 388357..389655 (-) 1299 WP_003184455.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36784.27 Da        Isoelectric Point: 5.1627

>NTDB_id=330653 FQB22_RS02000 WP_003184445.1 383809..384810(-) (ccpA) [Bacillus licheniformis strain KNU11]
MSNVTIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMDKELHLLNTMLGKQVDGIVFMSGNVTEEHVEEFKRSPVPIVLAASVEEKGETPSVAI
DYEQAIYDAATMLIEKGHKRLAFVSGPMAEPVNQAKKLQGFKRALGDKGLQFKEEYVVEGDYTYDSGMEALEALMKLDEK
PTAVLSATDEMALGVIHAAQDKGLAVPDDLEVIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEEVEEHIV
QLPHRIELRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=330653 FQB22_RS02000 WP_003184445.1 383809..384810(-) (ccpA) [Bacillus licheniformis strain KNU11]
ATGAGTAATGTGACAATATATGATGTAGCACGCGAAGCAAATGTAAGTATGGCAACCGTTTCCCGGGTCGTCAACGGGAA
TCCGAATGTCAAGCCGACGACGAGAAAGAAGGTGCTTGAAGCGATCGAGCGTCTTGGCTATCGTCCAAACGCCGTGGCAA
GAGGGCTGGCAAGCAAAAAGACGACGACTGTCGGCGTGATCATTCCCGATATTTCCAGTATCTTTTATTCAGAGCTGGCG
AGGGGAATCGAAGATATCGCAACGATGTACAAGTACAATATTATTTTGAGCAATTCCGACCAGAATATGGACAAAGAACT
TCATCTTTTGAATACGATGCTAGGAAAGCAAGTTGACGGTATCGTCTTTATGAGCGGAAATGTGACTGAAGAGCATGTGG
AGGAATTTAAGCGATCCCCAGTTCCGATCGTGCTTGCGGCATCTGTTGAAGAAAAAGGGGAAACGCCGTCGGTTGCGATC
GATTATGAACAGGCGATTTATGATGCGGCAACCATGCTGATTGAGAAAGGCCATAAGCGCCTTGCGTTCGTCTCAGGACC
TATGGCTGAACCGGTTAATCAAGCGAAAAAACTGCAAGGCTTTAAAAGAGCGCTTGGGGATAAGGGGCTGCAATTTAAGG
AAGAGTATGTTGTAGAAGGCGATTATACGTACGATTCAGGAATGGAAGCGCTGGAGGCTTTAATGAAGCTGGATGAAAAA
CCGACAGCCGTCCTGTCAGCGACAGACGAAATGGCGCTCGGCGTTATTCACGCAGCACAGGATAAAGGACTGGCTGTTCC
GGATGACCTTGAAGTGATCGGTTTTGACAATACAAGGCTTTCATTAATGGTTCGGCCGCAGCTGTCGACTGTCGTCCAGC
CTACGTATGATATCGGTGCCGTGGCGATGAGGCTTCTGACAAAGCTGATGAACAAAGAGGAAGTCGAAGAGCATATTGTC
CAGCTGCCGCATCGCATTGAACTCAGACAATCAACAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q65G28

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.939

99.099

0.535

  ccpA Streptococcus pneumoniae D39

53.636

99.099

0.532

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

49.699

99.7

0.495


Multiple sequence alignment