Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   EHC68_RS11990 Genome accession   NZ_CP034305
Coordinates   2389964..2392222 (-) Length   752 a.a.
NCBI ID   WP_031855592.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2370297..2394899 2389964..2392222 within 0


Gene organization within MGE regions


Location: 2370297..2394899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS11905 (EHC68_12130) - 2370297..2371067 (-) 771 WP_005456207.1 ABC transporter ATP-binding protein -
  EHC68_RS11915 (EHC68_12140) - 2371310..2372776 (-) 1467 WP_031855594.1 hypothetical protein -
  EHC68_RS11920 (EHC68_12145) - 2373233..2374780 (+) 1548 WP_005456280.1 DUF3360 family protein -
  EHC68_RS11925 (EHC68_12150) pflB 2375087..2377363 (+) 2277 WP_005456189.1 formate C-acetyltransferase -
  EHC68_RS11930 (EHC68_12155) - 2377516..2378493 (+) 978 WP_005481800.1 lipid A deacylase LpxR family protein -
  EHC68_RS11935 (EHC68_12160) pflA 2378640..2379380 (+) 741 WP_005456250.1 pyruvate formate lyase 1-activating protein -
  EHC68_RS11940 (EHC68_12165) - 2379541..2380209 (+) 669 WP_005495910.1 energy-coupling factor ABC transporter permease -
  EHC68_RS11945 (EHC68_12170) - 2380364..2380864 (+) 501 WP_005456271.1 YfbU family protein -
  EHC68_RS11955 (EHC68_12180) - 2381354..2383288 (+) 1935 WP_005456210.1 PrkA family serine protein kinase -
  EHC68_RS11960 (EHC68_12185) - 2383336..2384607 (+) 1272 WP_005481863.1 YeaH/YhbH family protein -
  EHC68_RS11965 (EHC68_12190) - 2384619..2386178 (+) 1560 WP_005456192.1 SpoVR family protein -
  EHC68_RS11970 (EHC68_12195) kdsB 2386256..2387011 (-) 756 WP_025540306.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EHC68_RS11975 (EHC68_12200) - 2387011..2387190 (-) 180 WP_005378451.1 Trm112 family protein -
  EHC68_RS11980 (EHC68_12205) lpxK 2387171..2388178 (-) 1008 WP_031855593.1 tetraacyldisaccharide 4'-kinase -
  EHC68_RS11985 (EHC68_12210) msbA 2388184..2389932 (-) 1749 WP_025533624.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  EHC68_RS11990 (EHC68_12215) comEC 2389964..2392222 (-) 2259 WP_031855592.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EHC68_RS11995 (EHC68_12220) - 2392231..2392740 (+) 510 WP_005456245.1 DUF2062 domain-containing protein -
  EHC68_RS12000 (EHC68_12225) lolE 2392945..2394189 (-) 1245 WP_031855591.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  EHC68_RS12005 (EHC68_12230) lolD 2394192..2394899 (-) 708 WP_085577267.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84725.17 Da        Isoelectric Point: 9.5002

>NTDB_id=330593 EHC68_RS11990 WP_031855592.1 2389964..2392222(-) (comEC) [Vibrio parahaemolyticus strain 20151116002-3]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSYWVIRTSSSWREAIIQTVERDIFRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDIFLVPQSWSVRYAIGTWQPISAEWTFVIAVVSAVLVLRHVMPRYVWMFVC
VIVVVTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWHNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNIEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=330593 EHC68_RS11990 WP_031855592.1 2389964..2392222(-) (comEC) [Vibrio parahaemolyticus strain 20151116002-3]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCAAGGGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTTTCGCCTTGAGCATTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGACTACTGCATCTTGTATCAATTTCTGGTCTACATATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCTAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACATATTTCTGGTTCCACAAAGTTGGTCGGTTCGATATGCCATAGGGACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGCAGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGGTGACAGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTGCTGGTCGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCACAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGCTACTCTAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGTTTGAACATTGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGTTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGAGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.803

100

0.988
  comEC Vibrio campbellii strain DS40M4

66.755

100

0.668
  comEC Vibrio cholerae strain A1552

41.036

100

0.411

Multiple sequence alignment