Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EHC66_RS02060 Genome accession   NZ_CP034294
Coordinates   403425..404069 (-) Length   214 a.a.
NCBI ID   WP_140103016.1    Uniprot ID   A0AAW8Q7X5
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 398425..409069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS02050 (EHC66_02110) uvrA 399335..402157 (-) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -
  EHC66_RS02055 (EHC66_02115) galU 402295..403167 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EHC66_RS02060 (EHC66_02120) qstR 403425..404069 (-) 645 WP_140103016.1 LuxR C-terminal-related transcriptional regulator Regulator
  EHC66_RS02065 (EHC66_02125) ssb 404348..404878 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  EHC66_RS02070 (EHC66_02130) csrD 405119..407128 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  EHC66_RS02075 (EHC66_02135) - 407140..408585 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24400.23 Da        Isoelectric Point: 8.7760

>NTDB_id=330483 EHC66_RS02060 WP_140103016.1 403425..404069(-) (qstR) [Vibrio parahaemolyticus strain 20140829008-1]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPIISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=330483 EHC66_RS02060 WP_140103016.1 403425..404069(-) (qstR) [Vibrio parahaemolyticus strain 20140829008-1]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTATAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTACCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATCGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

51.628

100

0.519

Multiple sequence alignment