Detailed information NTG0330448

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EHC64_RS03370
• Genome accession: NZ_CP034289
• Coordinates: 650190..651059 (-)
• Length: 289 a.a.
• NCBI ID: WP_015297252.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20140722001-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 645190..656059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC64_RS03335 (EHC64_03405)	rpsP	646165..646413 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
EHC64_RS03340 (EHC64_03410)	rimM	646442..646990 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
EHC64_RS03345 (EHC64_03415)	trmD	647018..647761 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EHC64_RS03350 (EHC64_03420)	rplS	647803..648156 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
EHC64_RS03355 (EHC64_03425)	yacG	648544..648738 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
EHC64_RS03360 (EHC64_03430)	zapD	648807..649547 (-)	741	WP_023624252.1	cell division protein ZapD	-
EHC64_RS03365 (EHC64_03435)	coaE	649575..650189 (-)	615	WP_031847490.1	dephospho-CoA kinase	-
EHC64_RS03370 (EHC64_03440)	pilD	650190..651059 (-)	870	WP_015297252.1	A24 family peptidase	Machinery gene
EHC64_RS03375 (EHC64_03445)	pilC	651124..652347 (-)	1224	WP_140103791.1	type II secretion system F family protein	Machinery gene
EHC64_RS03380 (EHC64_03450)	pilB	652372..654057 (-)	1686	WP_140103792.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EHC64_RS03385 (EHC64_03455)	-	654054..654512 (-)	459	WP_029847971.1	pilin	-
EHC64_RS03390 (EHC64_03465)	nadC	654778..655665 (-)	888	WP_140103793.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32371.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=330448 EHC64_RS03370 WP_015297252.1 650190..651059(-) (pilD) [Vibrio parahaemolyticus strain 20140722001-1]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=330448 EHC64_RS03370 WP_015297252.1 650190..651059(-) (pilD) [Vibrio parahaemolyticus strain 20140722001-1]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGACTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45