Detailed information NTG0330435

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: D5R83_RS03210
• Genome accession: NZ_CP042211
• Coordinates: 644901..645452 (+)
• Length: 183 a.a.
• NCBI ID: WP_000635139.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B128 7.13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 639901..650452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R83_RS03195 (D5R83_03195)	cysS	640081..641478 (-)	1398	WP_000471364.1	cysteine--tRNA ligase	-
D5R83_RS03200 (D5R83_03200)	murJ	641479..642939 (-)	1461	WP_000913575.1	murein biosynthesis integral membrane protein MurJ	-
D5R83_RS03205 (D5R83_03205)	-	643032..644876 (+)	1845	WP_000051313.1	FapA family protein	-
D5R83_RS03210 (D5R83_03210)	ruvA	644901..645452 (+)	552	WP_000635139.1	Holliday junction branch migration protein RuvA	Machinery gene
D5R83_RS03215 (D5R83_03215)	-	645476..645694 (-)	219	WP_000562067.1	hypothetical protein	-
D5R83_RS08365	-	645756..648299 (+)	2544	Protein_600	DUF3519 domain-containing protein	-
D5R83_RS03235 (D5R83_03235)	-	648303..648735 (+)	433	Protein_601	hypothetical protein	-
D5R83_RS03240 (D5R83_03240)	-	648732..649724 (+)	993	WP_000611625.1	hypothetical protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20227.87 Da
• Isoelectric Point: 8.4948

>NTDB_id=330435 D5R83_RS03210 WP_000635139.1 644901..645452(+) (ruvA) [Helicobacter pylori strain B128 7.13]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLEVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKKLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINKV
LKTLKPHLSIEAAIKEALQQLHS

Nucleotide

• Length: 552 bp

>NTDB_id=330435 D5R83_RS03210 WP_000635139.1 644901..645452(+) (ruvA) [Helicobacter pylori strain B128 7.13]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGCACTTCTGCTTTGCTTGAAGTGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCTTATTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGTCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCTACTAAAGAAGTCAA
AAAACTCCAGCAAGTCCCAGGCATTGGAAAAAAGCTCGCTGATAAGATCATGGTGGATCTCATTGGCTTTTTCATTCAAG
ATGAAAATAGACCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGTATAGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (139-182)

• Helix-hairpin-helix domain (HHH_5) (71-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	95.082	100	0.951
ruvA	Streptococcus pneumoniae TIGR4	33.846	100	0.361
ruvA	Streptococcus pneumoniae R6	33.846	100	0.361
ruvA	Streptococcus pneumoniae D39	33.846	100	0.361