Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SCA_RS07415 Genome accession   NC_012121
Coordinates   1481988..1482617 (-) Length   209 a.a.
NCBI ID   WP_041612989.1    Uniprot ID   -
Organism   Staphylococcus carnosus subsp. carnosus TM300     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476988..1487617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCA_RS07385 (SCA_1452) - 1477468..1478706 (-) 1239 WP_015900697.1 aminopeptidase -
  SCA_RS07390 (SCA_1453) - 1478745..1478951 (-) 207 WP_015900698.1 DUF1128 family protein -
  SCA_RS07395 (SCA_1454) - 1479187..1479651 (+) 465 WP_015900699.1 low molecular weight protein-tyrosine-phosphatase -
  SCA_RS07400 (SCA_1455) - 1479659..1479955 (+) 297 WP_015900700.1 hypothetical protein -
  SCA_RS07405 (SCA_1456) - 1480074..1481150 (+) 1077 WP_015900701.1 YihY/virulence factor BrkB family protein -
  SCA_RS07410 (SCA_1457) - 1481360..1481938 (+) 579 WP_015900702.1 beta-class carbonic anhydrase -
  SCA_RS07415 (SCA_1458) vraR 1481988..1482617 (-) 630 WP_041612989.1 response regulator transcription factor Regulator
  SCA_RS07420 (SCA_1459) vraS 1482607..1483650 (-) 1044 WP_015900704.1 sensor histidine kinase Regulator
  SCA_RS07425 (SCA_1460) liaF 1483647..1484348 (-) 702 WP_015900705.1 cell wall-active antibiotics response protein LiaF -
  SCA_RS07430 (SCA_1461) - 1484364..1484759 (-) 396 WP_015900706.1 hypothetical protein -
  SCA_RS07435 (SCA_1462) map 1484893..1485660 (-) 768 WP_015900707.1 type I methionyl aminopeptidase -
  SCA_RS07440 (SCA_1463) - 1485912..1486898 (+) 987 WP_015900708.1 FUSC family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23707.14 Da        Isoelectric Point: 4.6225

>NTDB_id=33034 SCA_RS07415 WP_041612989.1 1481988..1482617(-) (vraR) [Staphylococcus carnosus subsp. carnosus TM300]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELHPDLILMDLLMEDMDGVEATQQIKKDLPNIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREMEILLLIA
NGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=33034 SCA_RS07415 WP_041612989.1 1481988..1482617(-) (vraR) [Staphylococcus carnosus subsp. carnosus TM300]
ATGACGATTAAAGTGCTATTTGTTGATGACCATGAAATGGTGCGTATCGGCATTTCAAGTTATTTATCAACACAACCAGA
TATTGAAGTAGTAGGGGAAGGTAAATCTGGTAAAGAAGCTATTGAAAAAGCACATGAACTACATCCTGATTTAATTTTGA
TGGATTTATTGATGGAGGATATGGATGGTGTTGAAGCAACACAGCAAATCAAAAAAGATTTACCGAATATTAAAGTGTTG
ATGTTAACAAGTTACATTGAAGATAACGAAGTATATCGTGCATTAGATGCAGGGGTAGACAGTTATATCCTTAAAACAAC
CAGTGCAAGCGACATTGCAGAGGCAATCAGAAAAACACAACATAATGAATCTGTATTTGAAGCGGAAGTACTCGTTAAAA
TGCGTAATCGCATGAATCAACGTGCGGAATTATATGAAATGCTAACAGATAGAGAAATGGAAATTCTTTTATTAATTGCA
AATGGATATTCTAACCAAGAAATTGCAAGTGCATCACACATAACTATTAAAACAGTAAAAACGCATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTGATATATGCATTCCAACATGATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378

Multiple sequence alignment