Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAMF_RS39695 Genome accession   NC_014551
Coordinates   3833921..3834610 (-) Length   229 a.a.
NCBI ID   WP_013354152.1    Uniprot ID   A0A9P1NJR2
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3828921..3839610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS39675 (BAMF_3774) - 3829825..3830172 (-) 348 WP_013354148.1 YxeA family protein -
  BAMF_RS39680 (BAMF_3775) yxdM 3830186..3832054 (-) 1869 WP_013354149.1 ABC transporter permease YxdM -
  BAMF_RS39685 (BAMF_3776) yxdL 3832029..3832802 (-) 774 WP_013354150.1 ABC transporter ATP-binding protein YxdL -
  BAMF_RS39690 (BAMF_3777) yxdK 3832947..3833924 (-) 978 WP_013354151.1 two-component system sensor histidine kinase YxdK -
  BAMF_RS39695 (BAMF_3778) braR 3833921..3834610 (-) 690 WP_013354152.1 two-component system response regulator YxdJ Regulator
  BAMF_RS39700 (BAMF_3779) fba 3834718..3835590 (-) 873 WP_013354153.1 class II fructose-1,6-bisphosphate aldolase -
  BAMF_RS39705 (BAMF_3780) iolI 3835593..3836435 (-) 843 WP_013354154.1 2-keto-myo-inositol isomerase -
  BAMF_RS39710 (BAMF_3781) - 3836522..3837391 (-) 870 WP_013354155.1 sugar phosphate isomerase/epimerase family protein -
  BAMF_RS39715 (BAMF_3782) - 3837411..3838445 (-) 1035 WP_013354156.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26559.29 Da        Isoelectric Point: 4.8564

>NTDB_id=33035 BAMF_RS39695 WP_013354152.1 3833921..3834610(-) (braR) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=33035 BAMF_RS39695 WP_013354152.1 3833921..3834610(-) (braR) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCGGCCGCGGATTTTACGGCTGTTCTTGATGTTTTTTTACAGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAAGCCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGGGAGAAAGTGCTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACATGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTAT
CAATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397

Multiple sequence alignment