Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SCA_RS00130 Genome accession   NC_012121
Coordinates   30130..30651 (+) Length   173 a.a.
NCBI ID   WP_012664057.1    Uniprot ID   B9DIB9
Organism   Staphylococcus carnosus subsp. carnosus TM300     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 25130..35651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCA_RS00100 (SCA_0021) - 25664..26431 (-) 768 WP_012664051.1 SDR family NAD(P)-dependent oxidoreductase -
  SCA_RS00105 (SCA_0022) argF 26633..27637 (-) 1005 WP_012664052.1 ornithine carbamoyltransferase -
  SCA_RS00110 (SCA_0023) - 27878..28228 (-) 351 WP_012664053.1 type II toxin-antitoxin system PemK/MazF family toxin -
  SCA_RS00115 (SCA_0024) - 28222..28479 (-) 258 WP_012664054.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  SCA_RS00120 (SCA_0025) - 28637..29671 (+) 1035 WP_012664055.1 thermonuclease family protein -
  SCA_RS00125 (SCA_0026) rpsF 29812..30108 (+) 297 WP_012664056.1 30S ribosomal protein S6 -
  SCA_RS00130 (SCA_0027) ssbA 30130..30651 (+) 522 WP_012664057.1 single-stranded DNA-binding protein Machinery gene
  SCA_RS00135 (SCA_0028) rpsR 30708..30950 (+) 243 WP_012664058.1 30S ribosomal protein S18 -
  SCA_RS00140 (SCA_0029) - 31246..31464 (+) 219 WP_012664059.1 hypothetical protein -
  SCA_RS00145 (SCA_0030) - 31751..32074 (+) 324 WP_012664060.1 antibiotic biosynthesis monooxygenase -
  SCA_RS00150 (SCA_0031) - 32535..33128 (+) 594 WP_012664061.1 hypothetical protein -
  SCA_RS00155 (SCA_0032) - 33360..33953 (+) 594 WP_012664062.1 histidine phosphatase family protein -
  SCA_RS00160 (SCA_0033) - 34001..35167 (-) 1167 WP_012664063.1 ArgE/DapE family deacylase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19114.74 Da        Isoelectric Point: 5.2149

>NTDB_id=33013 SCA_RS00130 WP_012664057.1 30130..30651(+) (ssbA) [Staphylococcus carnosus subsp. carnosus TM300]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=33013 SCA_RS00130 WP_012664057.1 30130..30651(+) (ssbA) [Staphylococcus carnosus subsp. carnosus TM300]
ATGCTTAACAGAGTTGTATTGGTAGGACGTTTAACTCGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAGAATGTAAACAATTATTTGTTTAAAGGTAGTCTTGCTGGCGTTGACGGTCGCTTGCAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTGTGTGACAGTGTCCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATGGCGGCCAACAATCTGGAGGAGGCAATCAATTCCAAGATTACGGTCAAAGTTACGGTGGACAAC
AACAAGGTCAAAATACGTCATCTTATCAAAACCAAAATTCATCAAAATCTGGACAATCTGATAATCCATTTGCAAATGCA
AACGGACCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DIB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.584

0.364

Multiple sequence alignment