Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EBA29_RS16850 Genome accession   NZ_CP034203
Coordinates   3446223..3446912 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain 83     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3441223..3451912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS16815 (EBA29_03449) - 3441421..3441903 (-) 483 WP_003151394.1 flagellar protein FlgN -
  EBA29_RS16820 (EBA29_03450) flgM 3441918..3442184 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EBA29_RS16825 (EBA29_03451) - 3442254..3442673 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  EBA29_RS16830 (EBA29_03452) comFC 3442747..3443436 (-) 690 WP_206647877.1 phosphoribosyltransferase family protein Machinery gene
  EBA29_RS16835 (EBA29_03453) - 3443442..3443726 (-) 285 WP_022553866.1 competence protein ComFB -
  EBA29_RS16840 (EBA29_03454) comFA 3443784..3445169 (-) 1386 WP_128496920.1 DEAD/DEAH box helicase Machinery gene
  EBA29_RS16845 (EBA29_03455) - 3445277..3446125 (-) 849 WP_003151387.1 DegV family protein -
  EBA29_RS16850 (EBA29_03456) degU 3446223..3446912 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EBA29_RS16855 (EBA29_03457) degS 3446989..3448152 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EBA29_RS16860 (EBA29_03458) - 3448375..3449022 (+) 648 WP_007614107.1 YigZ family protein -
  EBA29_RS16865 (EBA29_03459) - 3449027..3450241 (+) 1215 WP_014419013.1 LCP family protein -
  EBA29_RS16870 (EBA29_03460) - 3450331..3451407 (-) 1077 WP_128496922.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=329827 EBA29_RS16850 WP_003219701.1 3446223..3446912(-) (degU) [Bacillus velezensis strain 83]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=329827 EBA29_RS16850 WP_003219701.1 3446223..3446912(-) (degU) [Bacillus velezensis strain 83]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAATGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment