Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EBA29_RS16840 Genome accession   NZ_CP034203
Coordinates   3443784..3445169 (-) Length   461 a.a.
NCBI ID   WP_128496920.1    Uniprot ID   -
Organism   Bacillus velezensis strain 83     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3438784..3450169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS16805 (EBA29_03447) flgL 3438959..3439876 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  EBA29_RS16810 (EBA29_03448) flgK 3439888..3441405 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  EBA29_RS16815 (EBA29_03449) - 3441421..3441903 (-) 483 WP_003151394.1 flagellar protein FlgN -
  EBA29_RS16820 (EBA29_03450) flgM 3441918..3442184 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EBA29_RS16825 (EBA29_03451) - 3442254..3442673 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  EBA29_RS16830 (EBA29_03452) comFC 3442747..3443436 (-) 690 WP_206647877.1 phosphoribosyltransferase family protein Machinery gene
  EBA29_RS16835 (EBA29_03453) - 3443442..3443726 (-) 285 WP_022553866.1 competence protein ComFB -
  EBA29_RS16840 (EBA29_03454) comFA 3443784..3445169 (-) 1386 WP_128496920.1 DEAD/DEAH box helicase Machinery gene
  EBA29_RS16845 (EBA29_03455) - 3445277..3446125 (-) 849 WP_003151387.1 DegV family protein -
  EBA29_RS16850 (EBA29_03456) degU 3446223..3446912 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EBA29_RS16855 (EBA29_03457) degS 3446989..3448152 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EBA29_RS16860 (EBA29_03458) - 3448375..3449022 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52706.19 Da        Isoelectric Point: 10.3121

>NTDB_id=329826 EBA29_RS16840 WP_128496920.1 3443784..3445169(-) (comFA) [Bacillus velezensis strain 83]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=329826 EBA29_RS16840 WP_128496920.1 3443784..3445169(-) (comFA) [Bacillus velezensis strain 83]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTTCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment