Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLA_RS04655 Genome accession   NC_012039
Coordinates   895490..896143 (+) Length   217 a.a.
NCBI ID   WP_012661641.1    Uniprot ID   B9KCG9
Organism   Campylobacter lari RM2100     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 890490..901143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLA_RS04630 (CLA1306) - 890587..892107 (-) 1521 WP_012661636.1 inorganic phosphate transporter -
  CLA_RS04635 (CLA1307) pdxA 892154..893254 (-) 1101 WP_012661637.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLA_RS04640 (CLA1308) - 893251..894018 (-) 768 WP_012661638.1 pyridoxine 5'-phosphate synthase -
  CLA_RS04645 (CLA1309) - 894074..895039 (+) 966 WP_012661639.1 exopolyphosphatase -
  CLA_RS04650 (CLA1310) - 895050..895493 (+) 444 WP_012661640.1 GatB/YqeY domain-containing protein -
  CLA_RS04655 (CLA1311) CJE0566 895490..896143 (+) 654 WP_012661641.1 DNA/RNA non-specific endonuclease Regulator
  CLA_RS04660 (CLA1312) dnaK 896177..898045 (-) 1869 WP_012661642.1 molecular chaperone DnaK -
  CLA_RS04665 (CLA1313) grpE 898067..898576 (-) 510 WP_012661643.1 nucleotide exchange factor GrpE -
  CLA_RS04670 (CLA1314) - 898573..899355 (-) 783 WP_012661644.1 HrcA family transcriptional regulator -
  CLA_RS08495 - 899598..899729 (+) 132 WP_255197728.1 hypothetical protein -
  CLA_RS04675 (CLA1316) - 899718..900347 (-) 630 WP_012661645.1 hypothetical protein -
  CLA_RS04680 (CLA1317) - 900344..900574 (-) 231 WP_012661646.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 26089.17 Da        Isoelectric Point: 9.8475

>NTDB_id=32981 CLA_RS04655 WP_012661641.1 895490..896143(+) (CJE0566) [Campylobacter lari RM2100]
MKKALILCTLALSSFAYTRYELDPSFKKYFQNCSLLMDKYYYINCYDYNYKGTKAIAYKLEARILNQKHIKKRPKFKDDT
NIPKKYRTYWEDYIKSGYTRGHVVPNQSMNTTPQAQLSTFLMSNITPQKKDINAKIWNEIEQRERYLAKKYKELEVLNLI
LYDDKPKRIKNNIAIPSFYVKILKAKNYSECYKVPNNDNFAEFDKNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=32981 CLA_RS04655 WP_012661641.1 895490..896143(+) (CJE0566) [Campylobacter lari RM2100]
ATGAAAAAAGCCTTAATTCTTTGCACTCTAGCCTTAAGCTCTTTTGCATACACTCGATATGAGCTTGATCCTAGCTTTAA
AAAGTATTTTCAAAATTGCTCTTTATTGATGGATAAGTATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AAGCAATAGCTTATAAACTTGAAGCTAGAATTTTAAATCAAAAACACATTAAAAAACGCCCAAAATTTAAAGATGATACT
AACATTCCTAAAAAATACAGAACTTATTGGGAAGATTATATAAAAAGTGGTTATACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATACAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAATATAACCCCACAAAAAAAAGATATCAATG
CAAAAATTTGGAATGAAATTGAACAAAGAGAAAGATATCTTGCAAAAAAATACAAAGAATTAGAAGTGCTAAATTTAATA
CTTTATGATGATAAACCAAAACGCATTAAAAATAATATCGCCATTCCTAGTTTTTATGTAAAAATTTTAAAAGCAAAAAA
TTATAGTGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAGAATTTGATAAAAATTATTTCAAGGAAGATTGTAAGA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9KCG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

63.184

92.627

0.585

Multiple sequence alignment