Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EH197_RS00520 | Genome accession | NZ_CP034169 |
| Coordinates | 9378..9884 (+) | Length | 168 a.a. |
| NCBI ID | WP_016179291.1 | Uniprot ID | - |
| Organism | Enterococcus avium strain 352 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4378..14884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH197_RS00510 (EH197_00515) | gyrA | 6334..8847 (+) | 2514 | WP_161169419.1 | DNA gyrase subunit A | - |
| EH197_RS00515 (EH197_00520) | rpsF | 9031..9333 (+) | 303 | WP_010742561.1 | 30S ribosomal protein S6 | - |
| EH197_RS00520 (EH197_00525) | ssb | 9378..9884 (+) | 507 | WP_016179291.1 | single-stranded DNA-binding protein | Machinery gene |
| EH197_RS00525 (EH197_00530) | rpsR | 9908..10141 (+) | 234 | WP_010747412.1 | 30S ribosomal protein S18 | - |
| EH197_RS00530 (EH197_00535) | - | 10326..12290 (+) | 1965 | WP_137438813.1 | DHH family phosphoesterase | - |
| EH197_RS00535 (EH197_00540) | rplI | 12287..12739 (+) | 453 | WP_016179293.1 | 50S ribosomal protein L9 | - |
| EH197_RS00540 (EH197_00545) | dnaB | 12868..14229 (+) | 1362 | WP_016179294.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18661.28 Da Isoelectric Point: 4.7200
>NTDB_id=329510 EH197_RS00520 WP_016179291.1 9378..9884(+) (ssb) [Enterococcus avium strain 352]
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTASEQRQQNPSSGDSFQGGGNNFNNNYNQSSQSAKNTMPDFDRDSDPFSGSSID
ISDDDLPF
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTASEQRQQNPSSGDSFQGGGNNFNNNYNQSSQSAKNTMPDFDRDSDPFSGSSID
ISDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=329510 EH197_RS00520 WP_016179291.1 9378..9884(+) (ssb) [Enterococcus avium strain 352]
TTGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAATGGTACAGGTGTTGC
CACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCAGATTTTATCAATTGTGTAATTT
GGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGA
AATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTAC
TGCAAGTGAACAACGTCAACAGAACCCAAGTTCCGGTGATAGCTTCCAAGGTGGGGGAAATAATTTTAACAACAATTATA
ATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATCGAGATTCAGATCCATTTAGTGGATCCTCTATCGAC
ATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAATGGTACAGGTGTTGC
CACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCAGATTTTATCAATTGTGTAATTT
GGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGA
AATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTAC
TGCAAGTGAACAACGTCAACAGAACCCAAGTTCCGGTGATAGCTTCCAAGGTGGGGGAAATAATTTTAACAACAATTATA
ATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATCGAGATTCAGATCCATTTAGTGGATCCTCTATCGAC
ATTTCAGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.798 |
100 |
0.655 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.062 |
100 |
0.601 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
63.095 |
0.381 |