Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EAL91_RS07760 Genome accession   NZ_CP034147
Coordinates   1592622..1593422 (-) Length   266 a.a.
NCBI ID   WP_121053858.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1587622..1598422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS07730 recJ 1587747..1589297 (+) 1551 WP_121053850.1 single-stranded-DNA-specific exonuclease RecJ -
  EAL91_RS07735 - 1589297..1590178 (+) 882 WP_121053852.1 RluA family pseudouridine synthase -
  EAL91_RS07740 - 1590242..1590802 (-) 561 WP_121053854.1 hypothetical protein -
  EAL91_RS07745 - 1590786..1591124 (-) 339 WP_001973467.1 hypothetical protein -
  EAL91_RS07750 - 1591311..1592162 (-) 852 WP_121053856.1 tetratricopeptide repeat protein -
  EAL91_RS07755 dprB 1592221..1592625 (-) 405 WP_115044631.1 Holliday junction resolvase RuvX Machinery gene
  EAL91_RS07760 dprA 1592622..1593422 (-) 801 WP_121053858.1 DNA-processing protein DprA Machinery gene
  EAL91_RS07765 minE 1593429..1593662 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EAL91_RS07770 minD 1593659..1594465 (-) 807 WP_121053859.1 septum site-determining protein MinD -
  EAL91_RS07775 ilvC 1594489..1595481 (-) 993 WP_121053861.1 ketol-acid reductoisomerase -
  EAL91_RS07785 - 1595733..1596515 (+) 783 WP_121053863.1 NAD+ synthase -
  EAL91_RS07790 - 1596512..1597450 (+) 939 WP_121053865.1 tetraacyldisaccharide 4'-kinase -
  EAL91_RS07795 pseH 1597383..1597925 (-) 543 WP_121053866.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29820.68 Da        Isoelectric Point: 7.8002

>NTDB_id=329361 EAL91_RS07760 WP_121053858.1 1592622..1593422(-) (dprA) [Helicobacter pylori strain HP14039]
MKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=329361 EAL91_RS07760 WP_121053858.1 1592622..1593422(-) (dprA) [Helicobacter pylori strain HP14039]
ATGAAAAGCCATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
TAACCATAAAGTGATCCAAGAAATTGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTACAAAGCGGT
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAACGCTTGAATGAAAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAATACTCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTTTTGGGTAAGATTAAGCGCATCAATCATATCGTGGTATTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41

Multiple sequence alignment