Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EAL91_RS07755 Genome accession   NZ_CP034147
Coordinates   1592221..1592625 (-) Length   134 a.a.
NCBI ID   WP_115044631.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587221..1597625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS07730 recJ 1587747..1589297 (+) 1551 WP_121053850.1 single-stranded-DNA-specific exonuclease RecJ -
  EAL91_RS07735 - 1589297..1590178 (+) 882 WP_121053852.1 RluA family pseudouridine synthase -
  EAL91_RS07740 - 1590242..1590802 (-) 561 WP_121053854.1 hypothetical protein -
  EAL91_RS07745 - 1590786..1591124 (-) 339 WP_001973467.1 hypothetical protein -
  EAL91_RS07750 - 1591311..1592162 (-) 852 WP_121053856.1 tetratricopeptide repeat protein -
  EAL91_RS07755 dprB 1592221..1592625 (-) 405 WP_115044631.1 Holliday junction resolvase RuvX Machinery gene
  EAL91_RS07760 dprA 1592622..1593422 (-) 801 WP_121053858.1 DNA-processing protein DprA Machinery gene
  EAL91_RS07765 minE 1593429..1593662 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EAL91_RS07770 minD 1593659..1594465 (-) 807 WP_121053859.1 septum site-determining protein MinD -
  EAL91_RS07775 ilvC 1594489..1595481 (-) 993 WP_121053861.1 ketol-acid reductoisomerase -
  EAL91_RS07785 - 1595733..1596515 (+) 783 WP_121053863.1 NAD+ synthase -
  EAL91_RS07790 - 1596512..1597450 (+) 939 WP_121053865.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15229.59 Da        Isoelectric Point: 8.2908

>NTDB_id=329360 EAL91_RS07755 WP_115044631.1 1592221..1592625(-) (dprB) [Helicobacter pylori strain HP14039]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=329360 EAL91_RS07755 WP_115044631.1 1592221..1592625(-) (dprB) [Helicobacter pylori strain HP14039]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment