Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   FPT06_RS04830 Genome accession   NZ_CP041994
Coordinates   958276..958542 (-) Length   88 a.a.
NCBI ID   WP_002939335.1    Uniprot ID   -
Organism   Streptococcus suis strain INT-01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 953276..963542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS04790 (FPT06_04790) rpsC 953598..954251 (-) 654 WP_002936661.1 30S ribosomal protein S3 -
  FPT06_RS04795 (FPT06_04795) rplV 954264..954608 (-) 345 WP_002936662.1 50S ribosomal protein L22 -
  FPT06_RS04800 (FPT06_04800) rpsS 954626..954907 (-) 282 WP_000533766.1 30S ribosomal protein S19 -
  FPT06_RS04805 (FPT06_04805) rplB 955009..955842 (-) 834 WP_002936663.1 50S ribosomal protein L2 -
  FPT06_RS04810 (FPT06_04810) - 955860..956159 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  FPT06_RS04815 (FPT06_04815) rplD 956159..956782 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  FPT06_RS04820 (FPT06_04820) rplC 956807..957433 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  FPT06_RS04825 (FPT06_04825) rpsJ 957646..957954 (-) 309 WP_013730061.1 30S ribosomal protein S10 -
  FPT06_RS04830 (FPT06_04830) comX/sigX 958276..958542 (-) 267 WP_002939335.1 hypothetical protein Regulator
  FPT06_RS04835 (FPT06_04835) - 958615..959193 (-) 579 Protein_926 nucleotidyltransferase family protein -
  FPT06_RS04840 (FPT06_04840) - 959492..960748 (+) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  FPT06_RS04845 (FPT06_04845) - 960874..961194 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  FPT06_RS04850 (FPT06_04850) ruvX 961206..961625 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  FPT06_RS04855 (FPT06_04855) - 961625..961891 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  FPT06_RS04860 (FPT06_04860) spx 961991..962389 (-) 399 WP_002939362.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10717.52 Da        Isoelectric Point: 9.1949

>NTDB_id=329221 FPT06_RS04830 WP_002939335.1 958276..958542(-) (comX/sigX) [Streptococcus suis strain INT-01]
MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDRLFHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=329221 FPT06_RS04830 WP_002939335.1 958276..958542(-) (comX/sigX) [Streptococcus suis strain INT-01]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAAACCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCTTCCATGAAGATATTCATAGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

73.973

82.955

0.614
  comX/sigX Streptococcus suis isolate S10

72.603

82.955

0.602
  comX/sigX Streptococcus suis P1/7

72.603

82.955

0.602
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.506

92.045

0.364
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.506

92.045

0.364