Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SaO267_RS08345 Genome accession   NZ_CP034102
Coordinates   1633201..1633647 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O267     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628201..1638647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO267_RS08315 (SaO267_01537) gcvPA 1629128..1630474 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SaO267_RS08320 (SaO267_01538) gcvT 1630494..1631585 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  SaO267_RS08325 (SaO267_01539) - 1631743..1632267 (-) 525 WP_001015120.1 shikimate kinase -
  SaO267_RS08330 - 1632257..1632403 (-) 147 WP_001789879.1 hypothetical protein -
  SaO267_RS08335 (SaO267_01540) comGF 1632500..1632997 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  SaO267_RS08340 (SaO267_01541) comGE 1632915..1633214 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  SaO267_RS08345 (SaO267_01542) comGD 1633201..1633647 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SaO267_RS08350 (SaO267_01543) comGC 1633625..1633936 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SaO267_RS08355 (SaO267_01544) comGB 1633950..1635020 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  SaO267_RS08360 (SaO267_01545) comGA 1634992..1635966 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SaO267_RS08365 (SaO267_01546) - 1636018..1636641 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SaO267_RS08370 (SaO267_01547) - 1636638..1636967 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SaO267_RS08375 (SaO267_01548) - 1636967..1637953 (-) 987 WP_126117023.1 ROK family glucokinase -
  SaO267_RS08380 - 1637950..1638153 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=329005 SaO267_RS08345 WP_001796473.1 1633201..1633647(-) (comGD) [Staphylococcus aureus strain O267]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=329005 SaO267_RS08345 WP_001796473.1 1633201..1633647(-) (comGD) [Staphylococcus aureus strain O267]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment