Detailed information NTG0329008

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOZ66_RS06835
• Genome accession: NZ_CP041945
• Coordinates: 1460220..1461224 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ST773
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1455220..1466224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOZ66_RS06805 (FOZ66_07005)	fghA	1455312..1456163 (+)	852	WP_033938392.1	S-formylglutathione hydrolase	-
FOZ66_RS06810 (FOZ66_07010)	ispF	1456234..1456707 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOZ66_RS06815 (FOZ66_07015)	truD	1456704..1457771 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
FOZ66_RS06820 (FOZ66_07020)	surE	1457759..1458508 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FOZ66_RS06825 (FOZ66_07025)	-	1458541..1459176 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOZ66_RS06830 (FOZ66_07030)	-	1459222..1460115 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOZ66_RS06835 (FOZ66_07035)	rpoS	1460220..1461224 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FOZ66_RS06840 (FOZ66_07040)	fdxA	1461651..1461974 (-)	324	WP_003092272.1	ferredoxin FdxA	-
FOZ66_RS06845 (FOZ66_07045)	mutS	1462041..1464608 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
FOZ66_RS06850 (FOZ66_07055)	-	1464734..1465741 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=329008 FOZ66_RS06835 WP_003113871.1 1460220..1461224(+) (rpoS) [Pseudomonas aeruginosa strain ST773]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=329008 FOZ66_RS06835 WP_003113871.1 1460220..1461224(+) (rpoS) [Pseudomonas aeruginosa strain ST773]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653