Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MCCL_RS08555 Genome accession   NC_011999
Coordinates   1663368..1663850 (-) Length   160 a.a.
NCBI ID   WP_041636134.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum JCSC5402     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1635671..1670491 1663368..1663850 within 0


Gene organization within MGE regions


Location: 1635671..1670491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS08355 - 1635671..1635934 (-) 264 WP_041636117.1 hypothetical protein -
  MCCL_RS08360 (MCCL_1510) - 1635949..1636410 (-) 462 WP_041636119.1 PH domain-containing protein -
  MCCL_RS11865 (MCCL_1511) - 1637653..1638429 (-) 777 WP_070105564.1 CHAP domain-containing protein -
  MCCL_RS08410 (MCCL_1512) - 1638469..1638771 (-) 303 WP_012657417.1 phage holin -
  MCCL_RS08415 (MCCL_1513) - 1638791..1639231 (-) 441 WP_041636120.1 hypothetical protein -
  MCCL_RS08420 - 1639294..1639581 (-) 288 WP_041636121.1 hypothetical protein -
  MCCL_RS12265 - 1639627..1639794 (-) 168 WP_158298082.1 hypothetical protein -
  MCCL_RS11725 (MCCL_1514) - 1639787..1644463 (-) 4677 WP_012657419.1 phage tail spike protein -
  MCCL_RS08430 (MCCL_1515) - 1644479..1645489 (-) 1011 WP_012657420.1 phage distal tail protein -
  MCCL_RS12560 (MCCL_1516) - 1645568..1645999 (-) 432 WP_050742447.1 phage tail domain-containing protein -
  MCCL_RS11735 (MCCL_1517) - 1646009..1650370 (-) 4362 WP_012657422.1 peptidoglycan DD-metalloendopeptidase family protein -
  MCCL_RS12270 - 1650395..1650544 (-) 150 WP_158298083.1 hypothetical protein -
  MCCL_RS08440 (MCCL_1518) gpG 1650604..1650957 (-) 354 WP_012657423.1 phage tail assembly chaperone G -
  MCCL_RS08445 (MCCL_1519) - 1651028..1651615 (-) 588 WP_012657424.1 major tail protein -
  MCCL_RS08450 (MCCL_1520) - 1651628..1652017 (-) 390 WP_012657425.1 hypothetical protein -
  MCCL_RS08455 (MCCL_1521) - 1652014..1652406 (-) 393 WP_012657426.1 HK97-gp10 family putative phage morphogenesis protein -
  MCCL_RS08460 (MCCL_1522) - 1652403..1652726 (-) 324 WP_012657427.1 phage head completion protein -
  MCCL_RS08465 (MCCL_1523) - 1652695..1653030 (-) 336 WP_041636122.1 head-tail connector protein -
  MCCL_RS08470 - 1653011..1653217 (-) 207 WP_041636124.1 hypothetical protein -
  MCCL_RS08475 (MCCL_1524) - 1653232..1654365 (-) 1134 WP_012657429.1 phage major capsid protein -
  MCCL_RS08480 (MCCL_1525) - 1654375..1654944 (-) 570 WP_041636125.1 HK97 family phage prohead protease -
  MCCL_RS08485 (MCCL_1526) - 1654928..1656169 (-) 1242 WP_012657431.1 phage portal protein -
  MCCL_RS12275 - 1656173..1656346 (-) 174 WP_157827310.1 hypothetical protein -
  MCCL_RS08490 (MCCL_1527) - 1656343..1658049 (-) 1707 WP_012657432.1 terminase large subunit -
  MCCL_RS08495 (MCCL_1528) - 1658046..1658531 (-) 486 WP_012657433.1 phage terminase small subunit P27 family -
  MCCL_RS08500 (MCCL_1529) - 1658663..1659010 (-) 348 WP_041636483.1 HNH endonuclease signature motif containing protein -
  MCCL_RS08505 (MCCL_1530) - 1659199..1659615 (-) 417 WP_012657435.1 hypothetical protein -
  MCCL_RS12280 - 1659848..1660021 (-) 174 WP_157820257.1 hypothetical protein -
  MCCL_RS08510 - 1660102..1660302 (-) 201 WP_041636127.1 hypothetical protein -
  MCCL_RS08515 (MCCL_1531) - 1660295..1660657 (-) 363 WP_012657436.1 hypothetical protein -
  MCCL_RS08520 (MCCL_1532) - 1660650..1661084 (-) 435 WP_012657437.1 hypothetical protein -
  MCCL_RS08525 - 1661081..1661266 (-) 186 WP_041636128.1 hypothetical protein -
  MCCL_RS08530 (MCCL_1533) - 1661263..1661571 (-) 309 WP_012657438.1 hypothetical protein -
  MCCL_RS12520 - 1661568..1661693 (-) 126 WP_269446081.1 hypothetical protein -
  MCCL_RS08535 (MCCL_1534) - 1661722..1662087 (-) 366 WP_012657439.1 YopX family protein -
  MCCL_RS12285 - 1662099..1662251 (-) 153 WP_158298084.1 hypothetical protein -
  MCCL_RS08540 (MCCL_1536) - 1662262..1662774 (-) 513 WP_041636130.1 Holliday junction resolvase RecU -
  MCCL_RS08545 - 1662895..1663083 (-) 189 WP_041636131.1 hypothetical protein -
  MCCL_RS08550 - 1663097..1663345 (-) 249 WP_041636132.1 hypothetical protein -
  MCCL_RS08555 (MCCL_1537) ssbA 1663368..1663850 (-) 483 WP_041636134.1 single-stranded DNA-binding protein Machinery gene
  MCCL_RS08560 (MCCL_1538) - 1663840..1664172 (-) 333 WP_012657441.1 hypothetical protein -
  MCCL_RS08565 (MCCL_1539) - 1664508..1664810 (-) 303 WP_041636135.1 hypothetical protein -
  MCCL_RS12440 - 1664803..1665273 (-) 471 WP_269446094.1 DnaD domain-containing protein -
  MCCL_RS12445 - 1665292..1665759 (-) 468 Protein_1750 helix-turn-helix domain-containing protein -
  MCCL_RS08575 - 1665796..1666056 (-) 261 WP_041636137.1 hypothetical protein -
  MCCL_RS08580 (MCCL_1541) - 1666046..1666804 (-) 759 WP_041636138.1 phage antirepressor KilAC domain-containing protein -
  MCCL_RS08585 - 1666894..1667082 (-) 189 WP_041636139.1 hypothetical protein -
  MCCL_RS08590 (MCCL_1542) - 1667079..1667387 (-) 309 WP_012657445.1 DUF771 domain-containing protein -
  MCCL_RS08595 - 1667410..1667631 (-) 222 WP_041636140.1 helix-turn-helix transcriptional regulator -
  MCCL_RS08600 (MCCL_1543) - 1667769..1668398 (+) 630 WP_012657446.1 LexA family protein -
  MCCL_RS08605 (MCCL_1544) - 1668470..1669321 (+) 852 WP_041636142.1 HIRAN domain-containing protein -
  MCCL_RS08610 (MCCL_1545) - 1669433..1670491 (+) 1059 WP_012657448.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17987.74 Da        Isoelectric Point: 4.9853

>NTDB_id=32892 MCCL_RS08555 WP_041636134.1 1663368..1663850(-) (ssbA) [Macrococcoides caseolyticum JCSC5402]
MINRAVLVGRLTKDPEYRVTQSGVAVASFTLAVNRTFTNANGERQADFINCIVFRKQAENVNTYLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCESVQFLEPKNSRSGTDHYNEYPQSQQTNDYASRDKKAQETMPDNNPFANADGPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=32892 MCCL_RS08555 WP_041636134.1 1663368..1663850(-) (ssbA) [Macrococcoides caseolyticum JCSC5402]
ATGATAAATAGAGCTGTTCTAGTAGGAAGATTAACAAAGGATCCAGAATATAGGGTTACACAGTCAGGAGTTGCAGTTGC
AAGTTTTACTCTAGCTGTAAACAGAACATTTACAAATGCCAATGGTGAAAGACAAGCAGACTTTATAAACTGCATCGTCT
TTCGCAAGCAAGCAGAAAACGTAAATACTTATCTACACAAAGGAAGCTTAGCTGGAGTAGATGGGAGATTACAATCACGT
AGCTATGACAATCAAGAAGGTAGACGAGTATATGTTACTGAAGTTGTATGTGAATCTGTTCAATTCTTAGAACCAAAGAA
CTCACGAAGCGGTACAGATCACTATAATGAATATCCGCAATCTCAGCAAACAAATGATTATGCATCACGTGACAAGAAAG
CACAGGAAACAATGCCAGATAATAATCCATTTGCTAATGCCGATGGGCCAATAGATATTAGTGATGATGATTTACCATTC
TAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.644
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.637

70.625

0.4
  ssb Neisseria gonorrhoeae MS11

33.333

100

0.362
  ssb Neisseria meningitidis MC58

33.333

100

0.362

Multiple sequence alignment