Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FPV29_RS01825 Genome accession   NZ_CP041919
Coordinates   393372..394004 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain Ec40743     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 388372..399004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV29_RS01800 (FPV29_01800) yhfG 388504..388671 (+) 168 WP_000736860.1 YhfG family protein -
  FPV29_RS01805 (FPV29_01805) fic 388661..389263 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FPV29_RS01810 (FPV29_01810) pabA 389295..389858 (+) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  FPV29_RS01815 (FPV29_01815) argD 389944..391164 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FPV29_RS01820 (FPV29_01820) yhfK 391231..393321 (-) 2091 WP_001442307.1 YccS/YhfK family putative transporter -
  FPV29_RS01825 (FPV29_01825) crp 393372..394004 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FPV29_RS01830 (FPV29_01830) yhfA 394306..394710 (+) 405 WP_001148908.1 OsmC family protein -
  FPV29_RS01835 (FPV29_01835) prkB 394765..395634 (-) 870 WP_001274680.1 phosphoribulokinase -
  FPV29_RS01840 (FPV29_01840) yheU 395688..395906 (-) 219 WP_000907085.1 YheU family protein -
  FPV29_RS01845 (FPV29_01845) yheT 395900..396922 (-) 1023 WP_000057402.1 hydrolase -
  FPV29_RS01850 (FPV29_01850) yheS 396922..398835 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=328919 FPV29_RS01825 WP_000242755.1 393372..394004(-) (crp) [Escherichia coli strain Ec40743]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=328919 FPV29_RS01825 WP_000242755.1 393372..394004(-) (crp) [Escherichia coli strain Ec40743]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467