Detailed information NTG0328875

Bioinformatically predicted

Overview

• Name: pilY2
• Type: Machinery gene
• Locus tag: EHF38_RS01670
• Genome accession: NZ_CP034092
• Coordinates: 351640..352122 (+)
• Length: 160 a.a.
• NCBI ID: WP_001046421.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain A52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	350009..351217	351640..352122	flank	423

Gene organization within MGE regions

Location: 350009..352122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHF38_RS01660 (EHF38_01660)	-	350009..351217 (-)	1209	WP_000343018.1	IS256-like element ISAba26 family transposase	-
EHF38_RS01665 (EHF38_01665)	pilY1	351307..351627 (+)	321	WP_128385708.1	hypothetical protein	Machinery gene
EHF38_RS01670 (EHF38_01670)	pilY2	351640..352122 (+)	483	WP_001046421.1	type IV pilin protein	Machinery gene

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17563.78 Da
• Isoelectric Point: 8.4834

>NTDB_id=328875 EHF38_RS01670 WP_001046421.1 351640..352122(+) (pilY2) [Acinetobacter baumannii strain A52]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide

• Length: 483 bp

>NTDB_id=328875 EHF38_RS01670 WP_001046421.1 351640..352122(+) (pilY2) [Acinetobacter baumannii strain A52]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (34-135)

• Prokaryotic N-terminal methylation motif (N_methyl) (10-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilY2	Acinetobacter baumannii D1279779	93.125	100	0.931
comE	Acinetobacter baylyi ADP1	38.953	100	0.419