Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   EHF38_RS01665 Genome accession   NZ_CP034092
Coordinates   351307..351627 (+) Length   106 a.a.
NCBI ID   WP_128385708.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 350009..351217 351307..351627 flank 90


Gene organization within MGE regions


Location: 350009..351627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01660 (EHF38_01660) - 350009..351217 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  EHF38_RS01665 (EHF38_01665) pilY1 351307..351627 (+) 321 WP_128385708.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11621.86 Da        Isoelectric Point: 7.0378

>NTDB_id=328874 EHF38_RS01665 WP_128385708.1 351307..351627(+) (pilY1) [Acinetobacter baumannii strain A52]
MGETDRQTYCLPFGACLNPDGTINSNKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQL
SGNENGTGEWQCTSHLHPVRWYERYR

Nucleotide


Download         Length: 321 bp        

>NTDB_id=328874 EHF38_RS01665 WP_128385708.1 351307..351627(+) (pilY1) [Acinetobacter baumannii strain A52]
GTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCAAATAA
AGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGTCATTG
GTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGCAAATTACAGCTG
TCTGGAAACGAGAACGGAACAGGTGAGTGGCAGTGTACAAGTCATTTACATCCTGTGCGCTGGTATGAGCGCTATCGCTA
G

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

77.358

100

0.774

Multiple sequence alignment