Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EHF38_RS01650 Genome accession   NZ_CP034092
Coordinates   345617..346435 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340617..351435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01615 (EHF38_01615) - 341199..341329 (-) 131 Protein_306 hypothetical protein -
  EHF38_RS01620 (EHF38_01620) rpoZ 341368..341646 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EHF38_RS01625 (EHF38_01625) gmk 341719..342348 (-) 630 WP_000015936.1 guanylate kinase -
  EHF38_RS01630 (EHF38_01630) ispH 342471..343421 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EHF38_RS01635 (EHF38_01635) fimU 343591..344064 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  EHF38_RS01640 (EHF38_01640) pilV 344058..344618 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EHF38_RS01645 (EHF38_01645) pilW 344619..345620 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  EHF38_RS01650 (EHF38_01650) pilX 345617..346435 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EHF38_RS01655 (EHF38_01655) - 346447..349974 (+) 3528 Protein_314 PilC/PilY family type IV pilus protein -
  EHF38_RS01660 (EHF38_01660) - 350009..351217 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=328873 EHF38_RS01650 WP_000149374.1 345617..346435(+) (pilX) [Acinetobacter baumannii strain A52]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=328873 EHF38_RS01650 WP_000149374.1 345617..346435(+) (pilX) [Acinetobacter baumannii strain A52]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment