Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   EHF38_RS01520 Genome accession   NZ_CP034092
Coordinates   317535..318275 (+) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312535..323275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01505 (EHF38_01505) ponA 313123..315678 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  EHF38_RS01510 (EHF38_01510) pilM 315839..316897 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  EHF38_RS01515 (EHF38_01515) pilN 316897..317538 (+) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  EHF38_RS01520 (EHF38_01520) pilO 317535..318275 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  EHF38_RS01525 (EHF38_01525) pilP 318286..318813 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  EHF38_RS01530 (EHF38_01530) pilQ 318876..321041 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  EHF38_RS01535 (EHF38_01535) aroK 321053..321622 (+) 570 WP_000643712.1 shikimate kinase AroK -
  EHF38_RS01540 (EHF38_01540) aroB 321651..322733 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=328866 EHF38_RS01520 WP_000076097.1 317535..318275(+) (pilO) [Acinetobacter baumannii strain A52]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=328866 EHF38_RS01520 WP_000076097.1 317535..318275(+) (pilO) [Acinetobacter baumannii strain A52]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment