Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MCCL_RS06595 Genome accession   NC_011999
Coordinates   1290268..1290591 (-) Length   107 a.a.
NCBI ID   WP_041636417.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum JCSC5402     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285268..1295591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS06570 (MCCL_1180) gcvPA 1285978..1287321 (-) 1344 WP_012657085.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MCCL_RS06575 (MCCL_1181) gcvT 1287334..1288419 (-) 1086 WP_041636415.1 glycine cleavage system aminomethyltransferase GcvT -
  MCCL_RS06580 (MCCL_1182) - 1288557..1289063 (-) 507 WP_012657087.1 shikimate kinase -
  MCCL_RS06585 (MCCL_1183) comGF 1289224..1289676 (-) 453 WP_012657088.1 competence type IV pilus minor pilin ComGF -
  MCCL_RS12080 - 1289621..1289863 (-) 243 WP_133433068.1 hypothetical protein -
  MCCL_RS06590 (MCCL_1184) - 1289850..1290275 (-) 426 WP_012657089.1 type II secretion system protein -
  MCCL_RS06595 (MCCL_1185) comGC 1290268..1290591 (-) 324 WP_041636417.1 competence type IV pilus major pilin ComGC Machinery gene
  MCCL_RS06600 (MCCL_1186) comGB 1290613..1291662 (-) 1050 WP_158298078.1 competence type IV pilus assembly protein ComGB -
  MCCL_RS06605 (MCCL_1187) comGA 1291637..1292608 (-) 972 WP_012657092.1 competence type IV pilus ATPase ComGA Machinery gene
  MCCL_RS06610 - 1292820..1293068 (+) 249 WP_041636023.1 DUF2626 domain-containing protein -
  MCCL_RS06615 (MCCL_1188) - 1293095..1293715 (-) 621 WP_012657093.1 MBL fold metallo-hydrolase -
  MCCL_RS11960 (MCCL_1189) - 1293805..1294044 (+) 240 WP_041636024.1 DUF2759 domain-containing protein -
  MCCL_RS06625 (MCCL_1190) - 1294071..1294382 (-) 312 WP_012657095.1 MTH1187 family thiamine-binding protein -
  MCCL_RS06630 (MCCL_1191) - 1294382..1295350 (-) 969 WP_012657096.1 ROK family glucokinase -
  MCCL_RS06635 - 1295347..1295538 (-) 192 WP_041636025.1 YqgQ family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11848.98 Da        Isoelectric Point: 8.4918

>NTDB_id=32883 MCCL_RS06595 WP_041636417.1 1290268..1290591(-) (comGC) [Macrococcoides caseolyticum JCSC5402]
MARRFKKQFSKDDGFTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTVNELVP
EYLKENQVKCKDGTDIIINNGEALLGA

Nucleotide


Download         Length: 324 bp        

>NTDB_id=32883 MCCL_RS06595 WP_041636417.1 1290268..1290591(-) (comGC) [Macrococcoides caseolyticum JCSC5402]
ATGGCGCGCAGGTTTAAAAAACAGTTTAGTAAGGATGATGGATTTACTTTAATTGAAATGTTATTAGTATTGCTCGTAAT
TTCGATTTTAATTATCGTCATTATTCCAAACATCGCTAAACAATCTAAGACTGTACAAGCTAAAGGATGCGAAGCTCAGG
TAAAGATGGTACAAGGTCAGATCGAAGCCTATCGGATCGATACTGGTAAAACACCGTCTACAGTAAATGAGCTTGTTCCT
GAATATTTGAAAGAAAATCAAGTGAAATGTAAAGATGGAACAGACATAATAATCAATAATGGCGAGGCATTATTAGGTGC
TTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.789

88.785

0.495
  comGC Staphylococcus aureus N315

55.789

88.785

0.495
  comGC Bacillus subtilis subsp. subtilis str. 168

45.652

85.981

0.393

Multiple sequence alignment