Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FOY95_RS05845 | Genome accession | NZ_CP041773 |
| Coordinates | 1186928..1187800 (+) | Length | 290 a.a. |
| NCBI ID | WP_019726811.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 519119 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1181928..1192800
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOY95_RS05820 (FOY95_05820) | - | 1182828..1183070 (+) | 243 | WP_023082027.1 | hypothetical protein | - |
| FOY95_RS05830 (FOY95_05830) | pilE | 1183301..1183774 (-) | 474 | WP_015503553.1 | pilin | Machinery gene |
| FOY95_RS05835 (FOY95_05835) | pilB | 1184005..1185704 (+) | 1700 | Protein_1124 | type IV-A pilus assembly ATPase PilB | - |
| FOY95_RS05840 (FOY95_05840) | pilC | 1185708..1186925 (+) | 1218 | WP_010792214.1 | type II secretion system F family protein | Machinery gene |
| FOY95_RS05845 (FOY95_05845) | pilD | 1186928..1187800 (+) | 873 | WP_019726811.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| FOY95_RS05850 (FOY95_05850) | coaE | 1187797..1188408 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| FOY95_RS05855 (FOY95_05855) | yacG | 1188405..1188605 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| FOY95_RS05860 (FOY95_05860) | - | 1188642..1188851 (-) | 210 | WP_003120946.1 | hypothetical protein | - |
| FOY95_RS05865 (FOY95_05865) | - | 1188957..1189646 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| FOY95_RS05870 (FOY95_05870) | - | 1189643..1190113 (-) | 471 | WP_019486073.1 | hypothetical protein | - |
| FOY95_RS05875 (FOY95_05875) | - | 1190110..1190535 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| FOY95_RS05880 (FOY95_05880) | - | 1190668..1191297 (+) | 630 | WP_003120948.1 | DUF1780 domain-containing protein | - |
| FOY95_RS05885 (FOY95_05885) | - | 1191294..1191743 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| FOY95_RS05890 (FOY95_05890) | - | 1191769..1191939 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31862.88 Da Isoelectric Point: 7.2974
>NTDB_id=328728 FOY95_RS05845 WP_019726811.1 1186928..1187800(+) (pilD) [Pseudomonas aeruginosa strain 519119]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=328728 FOY95_RS05845 WP_019726811.1 1186928..1187800(+) (pilD) [Pseudomonas aeruginosa strain 519119]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.671 |
99.655 |
0.545 |
| pilD | Vibrio campbellii strain DS40M4 |
53.147 |
98.621 |
0.524 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.64 |
95.862 |
0.476 |