Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH16_RS02740 Genome accession   NZ_CP034032
Coordinates   453421..454029 (+) Length   202 a.a.
NCBI ID   WP_047949524.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448421..459029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS02710 (EGH16_02710) - 448882..449463 (-) 582 WP_003698180.1 superoxide dismutase -
  EGH16_RS02720 (EGH16_02720) dnaB 449626..451032 (+) 1407 WP_050163863.1 replicative DNA helicase -
  EGH16_RS02725 (EGH16_02725) pilH 451187..451849 (+) 663 WP_047949526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH16_RS02730 (EGH16_02730) pilI 451881..452498 (+) 618 WP_047949522.1 type IV pilus modification protein PilV Machinery gene
  EGH16_RS02735 (EGH16_02735) pilJ 452495..453442 (+) 948 WP_047949523.1 PilW family protein Machinery gene
  EGH16_RS02740 (EGH16_02740) pilK 453421..454029 (+) 609 WP_047949524.1 pilus assembly protein Machinery gene
  EGH16_RS02745 (EGH16_02745) pilL 454031..454504 (+) 474 WP_195764428.1 PilX family type IV pilin Machinery gene
  EGH16_RS02760 (EGH16_02760) - 455116..455561 (-) 446 Protein_459 AzlC family ABC transporter permease -
  EGH16_RS02765 (EGH16_02765) dut 455727..456179 (+) 453 WP_003690909.1 dUTP diphosphatase -
  EGH16_RS02770 (EGH16_02770) dapC 456257..457444 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  EGH16_RS02775 (EGH16_02775) yaaA 457709..458488 (+) 780 WP_047949581.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22092.16 Da        Isoelectric Point: 8.0862

>NTDB_id=328429 EGH16_RS02740 WP_047949524.1 453421..454029(+) (pilK) [Neisseria gonorrhoeae strain FQ01]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVRKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=328429 EGH16_RS02740 WP_047949524.1 453421..454029(+) (pilK) [Neisseria gonorrhoeae strain FQ01]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGAAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.891

Multiple sequence alignment