Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EGH16_RS02725 Genome accession   NZ_CP034032
Coordinates   451187..451849 (+) Length   220 a.a.
NCBI ID   WP_047949526.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446187..456849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS02690 (EGH16_02690) cysT 446430..447266 (-) 837 WP_047949632.1 sulfate ABC transporter permease subunit CysT -
  EGH16_RS02695 (EGH16_02695) - 447452..447784 (+) 333 WP_003687908.1 hypothetical protein -
  EGH16_RS02700 (EGH16_02700) - 448143..448652 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH16_RS02710 (EGH16_02710) - 448882..449463 (-) 582 WP_003698180.1 superoxide dismutase -
  EGH16_RS02720 (EGH16_02720) dnaB 449626..451032 (+) 1407 WP_050163863.1 replicative DNA helicase -
  EGH16_RS02725 (EGH16_02725) pilH 451187..451849 (+) 663 WP_047949526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH16_RS02730 (EGH16_02730) pilI 451881..452498 (+) 618 WP_047949522.1 type IV pilus modification protein PilV Machinery gene
  EGH16_RS02735 (EGH16_02735) pilJ 452495..453442 (+) 948 WP_047949523.1 PilW family protein Machinery gene
  EGH16_RS02740 (EGH16_02740) pilK 453421..454029 (+) 609 WP_047949524.1 pilus assembly protein Machinery gene
  EGH16_RS02745 (EGH16_02745) pilL 454031..454504 (+) 474 WP_195764428.1 PilX family type IV pilin Machinery gene
  EGH16_RS02760 (EGH16_02760) - 455116..455561 (-) 446 Protein_459 AzlC family ABC transporter permease -
  EGH16_RS02765 (EGH16_02765) dut 455727..456179 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24498.88 Da        Isoelectric Point: 9.1626

>NTDB_id=328426 EGH16_RS02725 WP_047949526.1 451187..451849(+) (pilH) [Neisseria gonorrhoeae strain FQ01]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=328426 EGH16_RS02725 WP_047949526.1 451187..451849(+) (pilH) [Neisseria gonorrhoeae strain FQ01]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

93.182

100

0.932

Multiple sequence alignment