Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH16_RS00475 Genome accession   NZ_CP034032
Coordinates   76905..77387 (-) Length   160 a.a.
NCBI ID   WP_276311212.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 71905..82387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS00460 (EGH16_00460) ileS 72338..75127 (+) 2790 WP_003700877.1 isoleucine--tRNA ligase -
  EGH16_RS00470 (EGH16_00470) - 75570..76364 (-) 795 WP_124743171.1 opacity family porin -
  EGH16_RS00475 (EGH16_00475) pilE 76905..77387 (-) 483 WP_276311212.1 pilin Machinery gene
  EGH16_RS00490 (EGH16_00490) lspA 77968..78462 (+) 495 WP_003687321.1 signal peptidase II -
  EGH16_RS00495 (EGH16_00495) ispH 78492..79460 (+) 969 WP_003687322.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGH16_RS00505 (EGH16_00505) - 79571..80020 (+) 450 WP_124743173.1 transposase -
  EGH16_RS00515 (EGH16_00515) - 80226..80885 (-) 660 WP_003687323.1 HAD-IA family hydrolase -
  EGH16_RS00520 (EGH16_00520) - 81045..81260 (+) 216 WP_020996764.1 hypothetical protein -
  EGH16_RS00525 (EGH16_00525) - 81206..81749 (+) 544 Protein_76 TonB-dependent receptor -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17398.54 Da        Isoelectric Point: 8.2644

>NTDB_id=328414 EGH16_RS00475 WP_276311212.1 76905..77387(-) (pilE) [Neisseria gonorrhoeae strain FQ01]
MGIQDVKSQETFFPDKFPCRQGWIPARAQVSEAILLAEGQKSAVTEYYLNHGEWPKDNGAAGVASPSDIKGKYVESVTVA
KGVVTAKMASTGVNKEIKGKKLSLWARRQDGSVKWFCGQPVKRDDAAAKDDTVTDDATGNDGKIETKHLPSTCRDKHSDT

Nucleotide


Download         Length: 483 bp        

>NTDB_id=328414 EGH16_RS00475 WP_276311212.1 76905..77387(-) (pilE) [Neisseria gonorrhoeae strain FQ01]
GTGGGAATCCAGGACGTAAAATCTCAAGAAACCTTTTTTCCCGATAAGTTTCCGTGCCGACAAGGCTGGATTCCCGCCCG
CGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCACCGAGTATTACCTGAATCACGGCGAAT
GGCCCAAAGACAACGGTGCTGCCGGCGTGGCATCCCCCTCCGACATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGCA
AAAGGCGTCGTTACCGCCAAAATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAG
GCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGACGCCGCCGCCAAAGACGACACCGTCA
CCGACGACGCCACCGGCAACGACGGCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATAAACACTCTGACACC
TAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(26-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.917

90

0.656
  pilE Neisseria gonorrhoeae MS11

71.724

90.625

0.65

Multiple sequence alignment